View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2066_low_17 (Length: 230)
Name: NF2066_low_17
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_low_17 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 33368075 - 33367853
Alignment:
| Q |
8 |
ccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33368075 |
ccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaaga |
33367976 |
T |
|
| Q |
108 |
gtcccttctctggtctgcactgaataacaatggccgcactgttttcatcgatgaaaacgaatatattatctcaaaattcgaacagtccaacccaggtatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33367975 |
gtcccttctctggtctgcactgaataacaatggtcgcactgttttcatcgatgaaaacgaatatattatctcaaaattcgaacagtccaacccaggtatc |
33367876 |
T |
|
| Q |
208 |
gaagcttacgatgttcagttcac |
230 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33367875 |
gaagcttacgatgttcagttcac |
33367853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 33372278 - 33372054
Alignment:
| Q |
6 |
caccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttacaccaaaccccaacttccttatctttggtctcacccaa |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
33372278 |
caccaccaccaaatccatgtcctttgaagaaatcaacgctataacaaccactcttcaccttacaccacaccccaacttcctcatctttggtctcacccat |
33372179 |
T |
|
| Q |
106 |
gagtcccttctctggtctgcactgaataacaatggccgcactgttttcatcgatgaaaacgaatatattatctcaaaattcgaacagtccaacccaggta |
205 |
Q |
| |
|
||||| ||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| | |
|
|
| T |
33372178 |
gagtcacttctctggtctgcactaaaccaaaatggccgcactgttttcatcgacgaaaacgaatacatgatctcaaaatttgaacagtccaacccaggaa |
33372079 |
T |
|
| Q |
206 |
tcgaagcttacgatgttcagttcac |
230 |
Q |
| |
|
| |||||||| |||||||||||||| |
|
|
| T |
33372078 |
tagaagcttatgatgttcagttcac |
33372054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University