View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_low_3 (Length: 522)
Name: NF2066_low_3
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 5482183 - 5482304
Alignment:
| Q |
19 |
gggcatccgtattaagcttttttacatgattaatgcaacatattattcttttaataaaatgtccaaaccaaaaatctatcttaaattgttctatcatctt |
118 |
Q |
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| T |
5482183 |
gggcatccgtattaagcttttttacatgattaatgcaacatattattcttttaataaaatgtccaaaccaaaaatctatcttaaattattctatcatctt |
5482282 |
T |
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| Q |
119 |
tgatacaatgatcctgtttggt |
140 |
Q |
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| T |
5482283 |
tgatacaatgatcctgtttggt |
5482304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 5482333 - 5482399
Alignment:
| Q |
170 |
gataacggataacttaatcgataacaaatgaatttatagtcgatatattaaatttatagtattttct |
236 |
Q |
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| T |
5482333 |
gataatggataacttaatcgataacaaatgaatttatagtcgatatattaaatttatagtattttct |
5482399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 5482508 - 5482576
Alignment:
| Q |
339 |
cattacaagattgtgaggaaaaattgttatcaaatatgtaaagttgtgatataaacttataaactataa |
407 |
Q |
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| T |
5482508 |
cattacaagattgtgaggaaaaattgttatcaaatatgtaaagttgtgatataaacgtttaaactataa |
5482576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 512
Target Start/End: Original strand, 5482556 - 5482644
Alignment:
| Q |
423 |
atataagcttttaaactacaagttatcagttataaatttaaaaaattagtcttatgaaatataatgaatatcctaaaaagtttaagccct |
512 |
Q |
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| T |
5482556 |
atataaacgtttaaactataagttatcagttataaatttaaaa-attagtcttatgaaacataacgaatatcctaaaaaatttaagccct |
5482644 |
T |
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