View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_low_5 (Length: 492)
Name: NF2066_low_5
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 483
Target Start/End: Original strand, 11836558 - 11837026
Alignment:
| Q |
15 |
gatttcaccttcaatttggtagaactcttattcatcttgggatgataaacttatataaccttctcaaaaacatgattaatcaatccaaccttgcaacaag |
114 |
Q |
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| T |
11836558 |
gatttcaccttcaatttggtagaactcttattcatcttgggatgataaacttatataaccttctcaaaaacatgattaatcaatccaaccttgcaacaag |
11836657 |
T |
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| Q |
115 |
aacccttcacagttgaacttttcatatggttaattcaataatttatttttctcttggtgaattcacgnnnnnnncacttccttatcatttggttcctcta |
214 |
Q |
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| T |
11836658 |
aacccttcacagttgaacttttcatatggttaattcaataatttatttttctcttggtgaattcacgtttttttcacttccttatcatttggttcctcta |
11836757 |
T |
|
| Q |
215 |
attgttttcatggtacggtaataattaatctaggaaaaaggatatatggaggcttggatcttccgttggtaaactggaaaattgacatcggtttattaga |
314 |
Q |
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| T |
11836758 |
attgttttcatggtaccgtaataattaatctaggaaaaaggatagatggaggcttggatcttccgttggtaaactggaaaattgacatcggtttattaga |
11836857 |
T |
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| Q |
315 |
ttctacctcggagcgtacaattcaagagtgtggttccattttattggaagaaacatgtaatctttgtttaaaacatgtttgaaagccaaaaataaatata |
414 |
Q |
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| T |
11836858 |
ttctacctcggagcgtacaattcaagagtgtggttccattttattggaagaaacatgtaatctttgtttaaaacatgtttgaaagccaaaaataaataaa |
11836957 |
T |
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| Q |
415 |
aagactttagtctaacggatatagaaaataaaatcaaaatcaacaactaattcccgacaacagtattat |
483 |
Q |
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| T |
11836958 |
aagactttagtctaacggatatagaaaataaaatcaaaatcaacaactaattcccgacaacagtattat |
11837026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 36353790 - 36353894
Alignment:
| Q |
22 |
ccttcaatttggtagaactcttattcatcttgggatgataaacttatataacctt-ctcaaaaacatgattaatcaatccaaccttgcaacaagaaccct |
120 |
Q |
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||||||||||||| ||||||| || ||| |||||||| || | |||| || ||| ||||||||||||||| ||||| ||| ||| ||||||||| | | |
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| T |
36353790 |
ccttcaatttggttgaactctgatccattttgggatgtgaatcctatagaaactttctcaaaaacatgattcatcaaatcaatcttccaacaagaagcat |
36353889 |
T |
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| Q |
121 |
tcaca |
125 |
Q |
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| T |
36353890 |
tcaca |
36353894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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