View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2066_low_6 (Length: 464)

Name: NF2066_low_6
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2066_low_6
NF2066_low_6
[»] chr8 (15 HSPs)
chr8 (189-450)||(1297289-1297538)
chr8 (9-188)||(1296819-1296998)
chr8 (31-107)||(23550767-23550843)
chr8 (18-95)||(14762469-14762547)
chr8 (22-107)||(16872439-16872525)
chr8 (30-107)||(18185492-18185569)
chr8 (22-105)||(16864053-16864137)
chr8 (22-107)||(39284312-39284398)
chr8 (119-188)||(8080498-8080567)
chr8 (119-188)||(10844804-10844873)
chr8 (119-188)||(22026300-22026369)
chr8 (119-188)||(22549151-22549220)
chr8 (32-104)||(9634924-9634996)
chr8 (119-175)||(32292318-32292374)
chr8 (23-94)||(35455531-35455603)
[»] chr3 (6 HSPs)
chr3 (20-107)||(32078135-32078223)
chr3 (30-105)||(34344472-34344547)
chr3 (277-348)||(51263977-51264048)
chr3 (22-58)||(390607-390644)
chr3 (31-107)||(43649629-43649705)
chr3 (31-107)||(47915911-47915987)
[»] chr1 (21 HSPs)
chr1 (20-107)||(11030154-11030242)
chr1 (22-107)||(13352567-13352653)
chr1 (20-81)||(27352400-27352462)
chr1 (22-107)||(27952722-27952808)
chr1 (125-188)||(20057875-20057938)
chr1 (20-90)||(27327270-27327341)
chr1 (18-104)||(34186335-34186422)
chr1 (22-107)||(6049812-6049898)
chr1 (22-107)||(26061741-26061827)
chr1 (119-188)||(20054236-20054305)
chr1 (119-188)||(20054692-20054761)
chr1 (119-188)||(20055148-20055217)
chr1 (119-188)||(20055604-20055673)
chr1 (119-188)||(20056060-20056129)
chr1 (119-188)||(20056516-20056585)
chr1 (119-188)||(20056963-20057032)
chr1 (119-188)||(20057419-20057488)
chr1 (20-107)||(5466972-5467060)
chr1 (31-107)||(26448115-26448191)
chr1 (11-94)||(35150083-35150167)
chr1 (30-106)||(35370407-35370483)
[»] chr7 (6 HSPs)
chr7 (22-107)||(39983341-39983427)
chr7 (146-188)||(33316675-33316717)
chr7 (119-175)||(6747767-6747823)
chr7 (22-107)||(28587050-28587136)
chr7 (119-188)||(2463563-2463632)
chr7 (11-55)||(3346667-3346712)
[»] chr4 (11 HSPs)
chr4 (22-107)||(26855435-26855521)
chr4 (20-107)||(19721229-19721317)
chr4 (22-110)||(35340711-35340800)
chr4 (31-103)||(41855123-41855195)
chr4 (22-107)||(3086134-3086220)
chr4 (119-188)||(1645899-1645968)
chr4 (119-188)||(12692149-12692218)
chr4 (108-161)||(39180726-39180779)
chr4 (22-94)||(42133637-42133710)
chr4 (71-107)||(38052420-38052456)
chr4 (119-175)||(50398701-50398757)
[»] chr5 (6 HSPs)
chr5 (22-107)||(28024678-28024763)
chr5 (22-107)||(2123751-2123837)
chr5 (22-107)||(2881936-2882022)
chr5 (18-58)||(16745453-16745494)
chr5 (119-188)||(34371533-34371602)
chr5 (119-188)||(34371989-34372058)
[»] chr2 (4 HSPs)
chr2 (22-105)||(6714004-6714088)
chr2 (22-107)||(39235062-39235148)
chr2 (22-58)||(5274520-5274557)
chr2 (119-188)||(33770931-33771000)
[»] chr6 (3 HSPs)
chr6 (18-107)||(7595974-7596064)
chr6 (22-107)||(21072048-21072134)
chr6 (119-175)||(11062207-11062263)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 189 - 450
Target Start/End: Original strand, 1297289 - 1297538
Alignment:
Q  189 cgacaactatgagcaaattgcgagaagatggcttcggaaccagacttaagggtctaaatttgcctcaaggggtcattattctcatttggtcctatgtgag 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1297289 cgacaactatgagcaaattgcgagaagatggcttcggaaccagacttaagggtctaaatttgcctcaaggggtcattattctcatttggtcctatgtgag 1297388  T
Q  289 gtccttataatggttcttatggaccttgtgcaaagagtcgcttgaaacatatcttgggttagacttcggtccaaattgagaatgcaatagtgcgattcat 388  Q
    |||||||            |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  1297389 gtcctta------------tggaccttgtgcaaagagtcacttgaaacatatcttgggttagactttggtccaaattgagaatgcaatagtgcaattcat 1297476  T
Q  389 ttgttttggttcctaaatttaatttctcattcaaaacttataccattaaaatgtgactgtag 450  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1297477 ttgttttagttcctaaatttaatttctcattcaaaacttataccattaaaatgtgactgtag 1297538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 1296819 - 1296998
Alignment:
Q  9 aaatgaaatagaaatattatgattgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1296819 aaatgaaatagaaatattatgattgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaatt 1296918  T
Q  109 gtaacgtctgaggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||    
T  1296919 gtaacgtctgaggcttacgagggcagggagtgatgaccggtgcacaagacatgacaatgcgcggctcataacagcttcta 1296998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 23550843 - 23550767
Alignment:
Q  31 ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    |||||||| |||||||||||||||| || | ||| | || ||||||||||||||| |||||||| | ||||||||||    
T  23550843 ttgttttacaaaattgtctttaatagatagtataagaaagataaattaaagaattgaaagaagagaaaataataaat 23550767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 14762547 - 14762469
Alignment:
Q  18 agaaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagat 95  Q
    ||||||||||||| |||||||||||||||||| ||||||||| | ||  | || ||||||||||||||| ||| |||||    
T  14762547 agaaatattatgagttgttttataaaattgtccttaataaatggtatgagaaagataaattaaagaattgaaataagat 14762469  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 16872439 - 16872525
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||||||||||||| |||||||||   || || || |||||| |||||||| |||||||| ||| ||||||||    
T  16872439 atattatgagttgttttataaaattgtccttaataaatgatatgtgaaagataaatgaaagaattgaaagaagaaagagtaataaat 16872525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 18185569 - 18185492
Alignment:
Q  30 attgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| ||||||||||||||||||| | ||  | || ||||||||||||| | |||||||||| | ||||||||    
T  18185569 attgttttacaaaattgtctttaataaatggtatgagaaaaataaattaaagaactaaaagaagataaagtaataaat 18185492  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 16864137 - 16864053
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataa 105  Q
    ||||||||| |||||||| ||||||||  ||||| ||| | ||||| || ||||||||||||||| |||| ||||||| ||||||    
T  16864137 atattatgagttgttttacaaaattgttcttaattaatggtatatgaaagataaattaaagaattgaaagtagatagagtaataa 16864053  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 39284398 - 39284312
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||||| ||||||||  ||| | || |||||| || ||||| |||||||| ||| ||||||||    
T  39284398 atattatgagttgttttacaaaattgtcttcaataaattatataggaaagataaatgaaggaattgaaagaagagagagtaataaat 39284312  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 8080567 - 8080498
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| ||||||||  |||||| |  ||||||||||||||| ||||| | ||||||| ||||||||||||    
T  8080567 aggctgacgagggcgaggagtggtcgccggtgcacaaggcacgacaatgagcggctcttaacagcttcta 8080498  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 10844804 - 10844873
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  10844804 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 10844873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 22026300 - 22026369
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| ||||||||  |||||| |  ||||||||||||||||||||| | ||||||| | ||||||||||    
T  22026300 aggctgacgagggcgaggagtggtcgccggtgcacaaggcatgacaatgagcggctcctgacagcttcta 22026369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 22549220 - 22549151
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  22549220 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 22549151  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 9634996 - 9634924
Alignment:
Q  32 tgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataata 104  Q
    ||||||| ||||||||| ||||||||| | ||  | || ||||||||||||||| |||||||| ||| |||||    
T  9634996 tgttttacaaaattgtccttaataaatggtatgagaaaaataaattaaagaattgaaagaagagagactaata 9634924  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 32292318 - 32292374
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctc 175  Q
    ||||| |||||||| |||||||||  ||||||||||||||| ||||| | |||||||    
T  32292318 aggctgacgagggcggggagtgatcgccggtgcacaaggcacgacaatgagcggctc 32292374  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 35455603 - 35455531
Alignment:
Q  23 tattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaaga 94  Q
    |||||||| ||| |||| |||||| || ||||||||| | ||||| || ||||||||||||||| ||||||||    
T  35455603 tattatgagttggtttacaaaattatccttaataaatggtatatgaaagataaattaaagaattaaaagaaga 35455531  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 32078223 - 32078135
Alignment:
Q  20 aaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||  | || ||||||||||||||| ||| |||||||| ||||||||    
T  32078223 aaatattatgagttgttttacaaaattatctttaataaattgtatgagaaagataaattaaagaattgaaataagatagagtaataaat 32078135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 34344547 - 34344472
Alignment:
Q  30 attgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataa 105  Q
    ||||||||||||||||||||||||||||| | ||  | || ||||||||||||||| ||| |||||| ||||||||    
T  34344547 attgttttataaaattgtctttaataaatagtatgagaaagataaattaaagaattgaaaaaagatataataataa 34344472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 51264048 - 51263977
Alignment:
Q  277 gtcctatgtgaggtccttataatggttcttatggaccttgtgcaaagagtcgcttgaaacatatcttgggtt 348  Q
    ||||||||| |||||  ||| ||||||| ||||  ||||||||||||||  |||||||||||||||||||||    
T  51264048 gtcctatgtaaggtctatatcatggttcctatgagccttgtgcaaagagcagcttgaaacatatcttgggtt 51263977  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 390607 - 390644
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaat 58  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  390607 atattatgagttgttttataaaattgtctttaataaat 390644  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 43649705 - 43649629
Alignment:
Q  31 ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    |||||||| |||||| ||||||||||||   || || ||||||| ||||| |||| ||||||||||  |||||||||    
T  43649705 ttgttttacaaaattttctttaataaatgatatgtgaaatataagttaaaaaattgaaagaagatatcataataaat 43649629  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 47915911 - 47915987
Alignment:
Q  31 ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||||||| || ||||||||||| ||  | || |||||||||| |||| |||||| | ||| ||||||||    
T  47915911 ttgttttataaaattatccttaataaattgtatgagaaagataaattaaataattgaaagaaaagagagtaataaat 47915987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 11030242 - 11030154
Alignment:
Q  20 aaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||| |||| |||||||||||||| |||||||| | || || || |||||||||| |||| |||||||| ||||||||||||    
T  11030242 aaatattatgagttgtattataaaattgtctctaataaatggtatgtgaaagataaattaaaaaattgaaagaagagagaataataaat 11030154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 13352653 - 13352567
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| |||||| |||||||||| ||| ||  | || ||||||||||||||| |||||||||||| ||||||||    
T  13352653 atattatgagttgttttacaaaattatctttaataagttgtatgagaaagataaattaaagaattgaaagaagatagagtaataaat 13352567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 27352462 - 27352400
Alignment:
Q  20 aaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaag 81  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||  | ||||||||||||||    
T  27352462 aaatattatgagttgttttataaaattgtctttaataaattatatgagaaatataaattaaag 27352400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 27952808 - 27952722
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||| ||||||||| | ||  | || ||||||||||||||| |||||||| ||| ||||||||    
T  27952808 atattatgagttgttttacaaaattgtccttaataaatggtatgagaaagataaattaaagaattgaaagaagagagagtaataaat 27952722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 20057938 - 20057875
Alignment:
Q  125 acgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| ||||||||||||    
T  20057938 acgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctaacagcttcta 20057875  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 27327341 - 27327270
Alignment:
Q  20 aaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaag 90  Q
    ||||||||||| || |||||||||||| |||||||||||||| ||  | |||||||||||||| ||| ||||    
T  27327341 aaatattatgaattattttataaaattatctttaataaattgtatgagaaatataaattaaagtattgaaag 27327270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 34186335 - 34186422
Alignment:
Q  18 agaaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataata 104  Q
    ||||||||||| | |||||||| |||||| |||||||||||| | ||  | ||||||||||||| |||| ||| |||||||| |||||    
T  34186335 agaaatattataagttgttttacaaaattatctttaataaatagtatgagaaatataaattaaaaaattaaaaaaagatagagtaata 34186422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 6049898 - 6049812
Alignment:
Q  22 atattatgatt-gttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||| |||||||||||||||  |||||| ||   ||||| || |||||||||| |||| |||||||| ||| ||||||||    
T  6049898 atattatgatttgttttataaaattgttcttaatagatgatatatgaaagataaattaaataattaaaagaagagagagtaataaat 6049812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 26061741 - 26061827
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatgg--aatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| |||||||||||||||||||   ||||||  ||||||||| |||||||| ||| |||||| | ||||||||    
T  26061741 atattatgagttgttttacaaaattgtctttaataaat--aatatggaaaatataaatgaaagaattgaaaaaagatatagtaataaat 26061827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20054305 - 20054236
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20054305 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20054236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20054761 - 20054692
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20054761 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20054692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20055217 - 20055148
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20055217 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20055148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20055673 - 20055604
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20055673 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20055604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20056129 - 20056060
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20056129 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20056060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20056585 - 20056516
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20056585 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20056516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20057032 - 20056963
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20057032 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20056963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 20057488 - 20057419
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  20057488 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 20057419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 5466972 - 5467060
Alignment:
Q  20 aaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||| |||||||| ||||||||| ||||||| ||| ||  | |  ||||||||||||||| |||||| | ||| ||||||||    
T  5466972 aaatattatgagttgttttacaaaattgtccttaataagttgtatgagaatgataaattaaagaattgaaagaatagagagtaataaat 5467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 26448115 - 26448191
Alignment:
Q  31 ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    |||| ||| ||||||||| |||||||||   || || || ||||||||||||||| ||||||||| || ||||||||    
T  26448115 ttgtgttacaaaattgtccttaataaatgaaatgtgaaagataaattaaagaattgaaagaagatggagtaataaat 26448191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 35150083 - 35150167
Alignment:
Q  11 atgaaatagaaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaaga 94  Q
    |||||| ||| ||||||||| ||||||||||||||| || ||||||||||  ||  | || |||||||||| |||| ||||||||    
T  35150083 atgaaaaagagatattatgagttgttttataaaattatccttaataaattatatgagaaagataaattaaataattgaaagaaga 35150167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 35370483 - 35370407
Alignment:
Q  30 attgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaa 106  Q
    |||||||||||||||| || ||||||||| | ||    |||||||||||||||||| |||||| | ||||| |||||    
T  35370483 attgttttataaaattatccttaataaatggtattgaaaatataaattaaagaattgaaagaaaagagaatgataaa 35370407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 39983341 - 39983427
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||||||||||||| |||||||||   ||  | ||||||||| |||||||| |||||||||||| ||||||||    
T  39983341 atattatgagttgttttataaaattgtccttaataaataatatgagaaatataaatgaaagaattgaaagaagatagagtaataaat 39983427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 33316675 - 33316717
Alignment:
Q  146 cggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  33316675 cggtgcacaaggcatgacaacgagcggctcatgacagcttcta 33316717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 6747823 - 6747767
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctc 175  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||||| | |||||||    
T  6747823 aggctgacgagggcagggagtggtcgccggtgcacaaggcatgacaatgagcggctc 6747767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 28587136 - 28587050
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||| |||||||||  |||  | || |||||| |||||||| |||||| | ||||||||||||    
T  28587136 atattatgagttgttttacaaaattgtccttaataaataacatgagaaagataaatgaaagaattgaaagaaaagagaataataaat 28587050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 2463563 - 2463632
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| |  |||||| ||||||||||||    
T  2463563 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgaacggctcctaacagcttcta 2463632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 3346667 - 3346712
Alignment:
Q  11 atgaaatagaaatattatga-ttgttttataaaattgtctttaata 55  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||    
T  3346667 atgaaagagaaatattatgaattgttttataaaattgtccttaata 3346712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 26855521 - 26855435
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||| ||||||||||| ||  | || ||||||||||||||| |||||||| ||| ||||||||    
T  26855521 atattatgagttgttttacaaaattgtccttaataaattgtatgggaaagataaattaaagaattgaaagaagagagagtaataaat 26855435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 19721229 - 19721317
Alignment:
Q  20 aaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||| |||||||| ||| ||||| ||||||||| | ||| | || ||||||||||||||| |||||||| ||| ||||||||    
T  19721229 aaatattatgagttgttttacaaatttgtccttaataaatggtataagaaagataaattaaagaattgaaagaagagagagtaataaat 19721317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 35340800 - 35340711
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaattgt 110  Q
    ||||||||| |||||||| ||||||||  || |||||| | ||| | || ||||||||||||||| |||||||||| |||||||| ||||    
T  35340800 atattatgaattgttttacaaaattgttcttgataaatggtataagaaagataaattaaagaattgaaagaagataaaataataatttgt 35340711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 41855195 - 41855123
Alignment:
Q  31 ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataat 103  Q
    |||||||||||||||||||||| ||||||  ||  | || ||||||||||||||| |||||||| ||| ||||    
T  41855195 ttgttttataaaattgtctttagtaaattttatgagaaaaataaattaaagaattgaaagaagagagagtaat 41855123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 3086134 - 3086220
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||| ||||||||||  ||  | || ||||||||||||||| ||| |||| ||| ||||||||    
T  3086134 atattatgagttgttttacaaaattgtccttaataaattatatgagaaagataaattaaagaattgaaataagagagagtaataaat 3086220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 1645968 - 1645899
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  1645968 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 1645899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 12692218 - 12692149
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  12692218 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 12692149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 39180779 - 39180726
Alignment:
Q  108 tgtaacgtctgaggcttacgagggcagggagtgatgaccggtgcacaaggcatg 161  Q
    ||||||| |||||||| |||||| | ||||||||| ||||||||||||| ||||    
T  39180779 tgtaacgcctgaggctgacgaggacggggagtgatcaccggtgcacaagacatg 39180726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 42133637 - 42133710
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaaga 94  Q
    ||||||||| |||||||| ||||||||| ||||||||||| ||    || ||||||||||||||| ||||||||    
T  42133637 atattatgagttgttttacaaaattgtccttaataaattgtatggaaaagataaattaaagaattgaaagaaga 42133710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 38052420 - 38052456
Alignment:
Q  71 ataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  38052420 ataaattaaagaattgaaagaagataaaataataaat 38052456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 50398757 - 50398701
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctc 175  Q
    ||||| |||||||| ||||||| |  ||||||||||||||||||||| | |||||||    
T  50398757 aggctgacgagggcggggagtggtcgccggtgcacaaggcatgacaatgagcggctc 50398701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 28024763 - 28024678
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaata-taaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||| ||||||||||  |||||||| | ||||| |||||||| |||||||||||| ||||||||    
T  28024763 atattatgagttgttttacaaaattgtccttaataaatt--atatggaaaaataaatgaaagaattgaaagaagatagagtaataaat 28024678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 2123751 - 2123837
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| |||||| || ||||||||| | ||  | || ||||||||||||| | |||||||| ||||||||||||    
T  2123751 atattatgagttgttttacaaaattatccttaataaatggtatgagaaagataaattaaagaaatgaaagaagagagaataataaat 2123837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 2882022 - 2881936
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatgg--aatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||||||||||||| |||||||||   ||||||  ||||||||| |||||||| |||||||| | | ||||||||    
T  2882022 atattatgaattgttttataaaattgtccttaataaat--aatatggaaaatataaatgaaagaattgaaagaagagatagtaataaat 2881936  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 16745494 - 16745453
Alignment:
Q  18 agaaatattatga-ttgttttataaaattgtctttaataaat 58  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  16745494 agaaatattatgagttgttttacaaaattgtctttaataaat 16745453  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 34371533 - 34371602
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  34371533 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 34371602  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 34371989 - 34372058
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  34371989 aggctgacgagggcggggagtggtcgccggtgcacaaggcaggacaatgagcggctcctgacagcttcta 34372058  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 6714088 - 6714004
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataa 105  Q
    ||||||||| |||||||| ||||||||| |||||||||   ||  | ||||||||| |||||||| |||||||||||| ||||||    
T  6714088 atattatgagttgttttacaaaattgtccttaataaataatatgggaaatataaatgaaagaattgaaagaagatagagtaataa 6714004  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 39235062 - 39235148
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||||| |||||||   ||| | || ||||||||| ||||| |||||||| ||| ||||||||    
T  39235062 atattatgagttgttttacaaaattgtcttcaataaatgatataggaaagataaattaaggaattgaaagaagaaagagtaataaat 39235148  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 5274520 - 5274557
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaat 58  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  5274520 atattatgagttgttttataaaattgtctttaataaat 5274557  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 33770931 - 33771000
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctcataacagcttcta 188  Q
    ||||| |||||||| ||||||| |  ||||||||||||||| ||||| | ||||||| | ||||||||||    
T  33770931 aggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagcttcta 33771000  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 7596064 - 7595974
Alignment:
Q  18 agaaatattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||||||| |||||||| | |||| || ||||||||| |  |  | || ||||||||||||||| |||||||||| ||||||||||    
T  7596064 agaaatattatgagttgttttacacaattttccttaataaatggtgtcggaaagataaattaaagaattgaaagaagatataataataaat 7595974  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 21072048 - 21072134
Alignment:
Q  22 atattatga-ttgttttataaaattgtctttaataaattgcatatggaatataaattaaagaatttaaagaagatagaataataaat 107  Q
    ||||||||| |||||||| ||||||||| ||||||||| | ||  | || |||||||||||| || |||||||| ||| ||||||||    
T  21072048 atattatgagttgttttacaaaattgtccttaataaatggtatgagaaagataaattaaagatttgaaagaagagagagtaataaat 21072134  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 11062207 - 11062263
Alignment:
Q  119 aggcttacgagggcagggagtgatgaccggtgcacaaggcatgacaacgtgcggctc 175  Q
    |||||||||| ||| ||||||| | |||||||||||||||| ||||| | |||||||    
T  11062207 aggcttacgaaggcggggagtggtcaccggtgcacaaggcacgacaatgagcggctc 11062263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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