View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_low_9 (Length: 378)
Name: NF2066_low_9
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_low_9 |
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| [»] scaffold0562 (2 HSPs) |
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Alignment Details
Target: scaffold0562 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 8841 - 9099
Alignment:
| Q |
20 |
aatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctttgacaccttggttctaaaagttgaaaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8841 |
aatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctttgacaccttggttctaaaagttgaaaat |
8940 |
T |
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| Q |
120 |
aggtccaagctgtagtgatannnnnnnatttagtcttgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgc |
219 |
Q |
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| T |
8941 |
aggtccaagctgtagtgatatttttttatttagtcttgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgc |
9040 |
T |
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| Q |
220 |
taccgataatatatttc--atgtctttgatatttgcttcccaataaaattaaaatgctc |
276 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9041 |
taccgataatatatttcatatgtctttgatatttgcttcccaataaaattaaaatgctc |
9099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 9139 - 9186
Alignment:
| Q |
316 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
363 |
Q |
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| T |
9139 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
9186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 3878005 - 3878263
Alignment:
| Q |
20 |
aatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctttgacaccttggttctaaaagttgaaaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3878005 |
aatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctttgacaccttggttctaaaagttgaaaat |
3878104 |
T |
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| Q |
120 |
aggtccaagctgtagtgatannnnnnnatttagtcttgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgc |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878105 |
aggtccaagctgtagtgatatttttttatttagtcttgatttgtcacaattcctatgctagtactaattaataagtgacaacatttaaggagtgtattgc |
3878204 |
T |
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| Q |
220 |
taccgataatatatttc--atgtctttgatatttgcttcccaataaaattaaaatgctc |
276 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3878205 |
taccgataatatatttcatatgtctttgatatttgcttcccaataaaattaaaatgctc |
3878263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 3878303 - 3878350
Alignment:
| Q |
316 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878303 |
ggtctcttgtttattcttctctgaatttggtctatcatacacaatatt |
3878350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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