View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20670_high_3 (Length: 397)
Name: NF20670_high_3
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20670_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 43260904 - 43260536
Alignment:
| Q |
14 |
catcagaagtagtaaacaattgtctgaaattgaaaccaataaactactaagatttaatttatactatattcatcgatgcatatacaagaaaagactaaga |
113 |
Q |
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| T |
43260904 |
catcagaagtagtaaacaattgtctgaaattgaaaccaataaactactaagatttaatttatactatattcattgatgcatatacaagaaaagactaaga |
43260805 |
T |
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| Q |
114 |
atgaaaatgtgaaataacagttgtgaccttttatatttgaaagatggagcattcccgaagaagttgaggaaaatggtttgaagatgaggactggaaagcc |
213 |
Q |
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| T |
43260804 |
atgaaaatgtgaaataacagttgtgaccttttatatttgaaagatggagcattcccaaagaagttgaggaaaatggtttgaagatgaggactggaaagcc |
43260705 |
T |
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| Q |
214 |
atggtgtaacagaatatccaccttgaagaattggacactttgaaacgacggcgtcgtagatttgggaacaagagttgtaactgaactcagctggagagca |
313 |
Q |
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| T |
43260704 |
atggtgtaacagaatatccgccttgaagaattggacactttgaaacgacggcgtcgtagatttgggaacaagagttgtaactgaactcagctggagagca |
43260605 |
T |
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| Q |
314 |
tgagaatccagagaagagatcttgaaggaaatgaatttcaaggaaattgtagagaaagcaagtaagaag |
382 |
Q |
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| T |
43260604 |
tgagaatccagagaagagatcttgaaggaaatggatttcaaggaaattgtagagaaagcaagtaagaag |
43260536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 367
Target Start/End: Complemental strand, 43270960 - 43270726
Alignment:
| Q |
133 |
gttgtgaccttttatatttgaaagatggagcattcccgaagaagttgaggaaaatggtttgaagatgaggactggaaagccatggtgtaacagaatatcc |
232 |
Q |
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| T |
43270960 |
gttgtgaccttttgtatttaaaagtaggaggatttccgaagaagttaagaaaaacagtttgaagatgaggactagaaagccaaggcgtgacggagtatct |
43270861 |
T |
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| Q |
233 |
accttgaagaattggacactttgaaacgacggcgtcgtagatttgggaacaagagttgtaactgaactcagctggagagcatgagaatccagagaagaga |
332 |
Q |
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| T |
43270860 |
gccgtgaagaatccggcacttagaaacgacggcatcgtagataacggatgaggagttgtaggtgaagtggacggtggagccggagaatccggtgaggaga |
43270761 |
T |
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| Q |
333 |
tcttgaaggaaatgaatttcaaggaaattgtagag |
367 |
Q |
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| T |
43270760 |
tcttggaggaaatggatttcgaggaaattgtagag |
43270726 |
T |
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Back To:
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