View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20670_high_4 (Length: 362)
Name: NF20670_high_4
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20670_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 38660053 - 38659721
Alignment:
| Q |
13 |
atgaagtaagaaaatataaagagaataatagtgttaaaataggagagtgcttcattttaaatatagtttctactaaaaattaggaaaaat--gagataca |
110 |
Q |
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| T |
38660053 |
atgaagtaagaaaatataaagagaataatagtgttaaaataggagagtgcttcattttaaatatagtttctactaaaaattaggaaaaatatgagataca |
38659954 |
T |
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| Q |
111 |
aattaattggcttagtgagtgtcaagtgtaaaaacaactagatgaaaggaataaagtcacaaatagtaacctttagtttgaggaagttgaaagaaaaacc |
210 |
Q |
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| T |
38659953 |
aattaattggcttagtgagtgtcaagtgtaaaaacaactagatgaaaggaataaagtcacaaatagtaacctttagtttgaggaagttgaaagaaaaacc |
38659854 |
T |
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| Q |
211 |
aaaggagattctactttctatgttcaagtgactaggagcactagtagactatagaacacacaagttgcaattgagttataaggtaatggaactggatgga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38659853 |
aaaggagattctactttctatgttcaagtgactaggagcactagtacactatagaacacacaagttgcaattgagttataaggtaatggaactggatgga |
38659754 |
T |
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| Q |
311 |
atggaatacatgcagaataagaaaggttgtgtt |
343 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
38659753 |
atgaaatacatgcagaataagaaaggttgtgtt |
38659721 |
T |
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