View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20670_high_7 (Length: 301)
Name: NF20670_high_7
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20670_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 11177790 - 11177580
Alignment:
| Q |
13 |
attaaaacaacaactacaagataaagagagatttctctcgctctcaagattaagaacaacaatacaacatttaaccccaatcctacgttaaacatccctt |
112 |
Q |
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| T |
11177790 |
attaaaacaacaactacaagatcaagagagatttctctcgctctcaagattaagaacaacaatacaacatttaaccccaatcctatgttaaacatccctt |
11177691 |
T |
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| Q |
113 |
cttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttcactggttcctcactctcctcttcccattataat---catcctcata |
209 |
Q |
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| T |
11177690 |
cttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttcactggttcctcactctcctcttcccattataatcatcatcctcata |
11177591 |
T |
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| Q |
210 |
attttcaacat |
220 |
Q |
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||||||||||| |
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| T |
11177590 |
attttcaacat |
11177580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 11177534 - 11177448
Alignment:
| Q |
215 |
caacattaaccttatcttcatcactagttgctaatgttatagcacccttgttatcttcatcttcatatttacaacccttgcgttgtt |
301 |
Q |
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| T |
11177534 |
caacattaaccttatcatcaccactagtagctaatgttatagcacccttgttatcttcatcttcatatttaccacccttgcgttgtt |
11177448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 4703298 - 4703392
Alignment:
| Q |
110 |
cttcttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttcactgg-ttcctcactctcctcttcccattataatcatc |
203 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||| ||||||||||||||||| |||||| |
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| T |
4703298 |
cttcttagaaacatgttagcttcatttcacattaacgattttagtgacctttctttcacgggtttcctcattctcctcttcccattatcatcatc |
4703392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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