View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20670_low_1 (Length: 1002)
Name: NF20670_low_1
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20670_low_1 |
 | |
|
| [»] scaffold0466 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 433 - 1000
Target Start/End: Original strand, 39779403 - 39779971
Alignment:
| Q |
433 |
aatcaaggaaagatatgagatccattacctcactgatctggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779403 |
aatcaaggaaagatatgagatccattacctcactgatccggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt |
39779502 |
T |
|
| Q |
533 |
gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779503 |
gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt |
39779602 |
T |
|
| Q |
633 |
tccacatacattgaggactaggacctcaattctcctcatcgatggtaatgagactgggcaatggtcagataggcctctgatcaaagcattcattactttt |
732 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39779603 |
tcaacatacattgaggacgacgacctcaattctcctcatcgatggtaatgagactgggcaatggtcagatagtcctctgatcaaagcattcattactttt |
39779702 |
T |
|
| Q |
733 |
attcatctctatctatcatctttagattacttagaactcaagaaataaaacaagttgcgctagcatgttcacttatagattaattactctgttctctcaa |
832 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779703 |
attcatctctatcgatcatctttagattacttagaactcaagaaataaaacaagttgcgctaacatgttcacttatagattaattactctgttctctcaa |
39779802 |
T |
|
| Q |
833 |
aggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatgtccttctcagtttgaaacaccgtctaaatcacgtctttcaac-nnnnnn |
931 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779803 |
aggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatgtccttctcagtttgaaacaccgtctaaatcacgtctttcaacttttttt |
39779902 |
T |
|
| Q |
932 |
nattaacttttaaaagagagattgtgaatgtccttctcaatattttttctgttgatg-atgtccatctca |
1000 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
39779903 |
tattagcttttaaaaga-agattgtgaatgtccttctcaatattttttctgtttgtgaatgtccatctca |
39779971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 39777138 - 39777554
Alignment:
| Q |
19 |
gttacatgaaaaaatcaacctttattccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777138 |
gttacatgaaaaaatcaacctttattccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcat |
39777237 |
T |
|
| Q |
119 |
ttactttgtgccactagcatcatatatatactctatattaaagagagaagatggaacatatagaaaagaagctcatcatgctttctattaagctctcatc |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777238 |
ttagtttgtgccactagcatcatatatatactct-tataaaagagagaagagggaacatatagaaaagaagctcatcatgctttctattaagctctcatc |
39777336 |
T |
|
| Q |
219 |
ttttctatcgttcttctaccataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaact |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
39777337 |
ttttctatcgttcttctaccataattttgggcattgttattgaagctccatcgtgttcagacctcgagtgcataggttcaaacacgcagttgtgtaaact |
39777436 |
T |
|
| Q |
319 |
ttggagagcaaaaccggatctgggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctt |
418 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777437 |
ttggggagcaaaaccggatctgggttgtaccggaggtccaccgaaaattcgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctt |
39777536 |
T |
|
| Q |
419 |
tcctagctatccaaaatc |
436 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39777537 |
tcctagctatccaaaatc |
39777554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 44 - 330
Target Start/End: Complemental strand, 32743946 - 32743653
Alignment:
| Q |
44 |
tccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccactagcatcatat |
143 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| | ||| || |
|
|
| T |
32743946 |
tccattagttttcattgccattaatattttttatgttgctaagaaatgttgcaacggaaagatagagccattcattttgtttgtgccactgacgtcacat |
32743847 |
T |
|
| Q |
144 |
atatactctatattaaagagagaagatg----gaa----cat---atagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttct |
232 |
Q |
| |
|
||||||| |||| || ||||| ||| | ||| ||| |||||| | |||| ||||||||||||||||||||||| |||| | | | ||||| |
|
|
| T |
32743846 |
atatacttaatataaatgagagcagaggtagagaagtggcatgtggtagaaatgcagctgatcatgctttctattaagctctcttcttctttcttgttct |
32743747 |
T |
|
| Q |
233 |
tctaccataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaa |
330 |
Q |
| |
|
| ||||||||||| |||||| |||||||||||||||||| | |||| |||||| |||| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
32743746 |
t---tgataattttgggtattgtttgtgaagctccatcgtgtt-tggcctcaagtgcatgagttcagacaagcagttgtgtaaaccttggggagcaaa |
32743653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 249 - 436
Target Start/End: Complemental strand, 1094573 - 1094385
Alignment:
| Q |
249 |
gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgca- |
347 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| || | |||||||||||||| ||||||||| |
|
|
| T |
1094573 |
gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaaccggatttgggttgcac |
1094474 |
T |
|
| Q |
348 |
ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc |
436 |
Q |
| |
|
|||||| |||| ||||||||||| ||| | || || |||||||| |||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
1094473 |
ccggagatccaccgaaaatttgctttcaggacagtgacttttgtcacggcacaacaactctcttctatctttcctatctattcaaaatc |
1094385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 246 - 367
Target Start/End: Complemental strand, 1090817 - 1090696
Alignment:
| Q |
246 |
tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg |
345 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| ||||||||| | |||| |||||| ||||||||||| |||| ||| |||||||||| ||||||| |
|
|
| T |
1090817 |
tgggcattgtttgtgaaactccgtcgtgttcaggcctcgagtgtccgagttcagacacgtagttgtgtaaatcttggggagtaaaaccggatttgggttg |
1090718 |
T |
|
| Q |
346 |
caccggaggtccattgaaaatt |
367 |
Q |
| |
|
||| | |||||||| ||||||| |
|
|
| T |
1090717 |
cactgaaggtccatcgaaaatt |
1090696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 242 - 413
Target Start/End: Original strand, 34249315 - 34249486
Alignment:
| Q |
242 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg |
340 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||| |||| |||| |||||| |||||| |||| ||||||||| |||| || |
|
|
| T |
34249315 |
attttgggcattgtttatgaagctccatcgtgtt-tgatctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactggataatg |
34249413 |
T |
|
| Q |
341 |
ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttct |
413 |
Q |
| |
|
||||||| ||||||||| |||||||| || ||| ||||||||||| || |||||||||| ||||||| |
|
|
| T |
34249414 |
agttgcactggaggtccaccgaaaattttctttcagagcaatggttttgaccacggcacaacaaaactcttct |
34249486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 249 - 419
Target Start/End: Original strand, 29360204 - 29360373
Alignment:
| Q |
249 |
gcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgca |
347 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| ||||||| ||| ||||||||||||||||||| ||| |||||||| ||||| | |||||||| |
|
|
| T |
29360204 |
gcattgtttatgaagctccatcgtgtttgg-cctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgca |
29360302 |
T |
|
| Q |
348 |
ccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt |
419 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
29360303 |
ccggaggtccaccgaaaatttgctttcaaggcagtgacttttgtc-gggcacaacaattctcttatatcttt |
29360373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 246 - 423
Target Start/End: Original strand, 5716850 - 5717026
Alignment:
| Q |
246 |
tgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttg |
345 |
Q |
| |
|
|||||||| || ||||||||||||||| || ||| ||||||| | ||| |||||||||||||||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
5716850 |
tgggcattatttgtgaagctccatcgttttt-gacttcgagtggatgagtttagacacgcagttgtgtaaattttggggagcaaaatcggacttgggttg |
5716948 |
T |
|
| Q |
346 |
caccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttccta |
423 |
Q |
| |
|
||||||| || || | |||||||| ||| |||| |||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
5716949 |
caccggaagtacaccggaaatttgcattcagggcagtggtttttaccacggcacaacaactctcttctatctttccta |
5717026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 242 - 430
Target Start/End: Complemental strand, 8421 - 8234
Alignment:
| Q |
242 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgg |
341 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||| | || |||| ||||||| |||| |||||| |||||||||||| |||| |||||||||||||| | |
|
|
| T |
8421 |
attttgggtattgtttgtgaagctccaacgtgct-ag-cctcaagtgcacgagttcagacacgtagttgtgtaaacattggggagcaaaaccggatatta |
8324 |
T |
|
| Q |
342 |
g-ttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatcc |
430 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||| |||| | | ||||| || ||| |||||| ||||||||||||||| || |||||| |
|
|
| T |
8323 |
aattgcaccagaggtccattggaaatttgctttcatggcagttgcttttgccacggcgcaacaactctcttctatctttcgtatctatcc |
8234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 250 - 419
Target Start/End: Complemental strand, 9229403 - 9229234
Alignment:
| Q |
250 |
cattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgcac |
348 |
Q |
| |
|
||||||| |||||||||||| ||||| | ||| ||||||| |||| |||| ||| |||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
9229403 |
cattgtttgtgaagctccattgtgttt-gcccttaagtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatattgggttgcat |
9229305 |
T |
|
| Q |
349 |
cggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatcttt |
419 |
Q |
| |
|
| |||||| || |||||||| || ||| | | ||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
9229304 |
ctgaggtctatcgaaaattttctttcagagtagtggttttggccacggcacaacaattctcttctatcttt |
9229234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 242 - 421
Target Start/End: Original strand, 25678030 - 25678208
Alignment:
| Q |
242 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg |
340 |
Q |
| |
|
||||||||||||||| ||||||||||| | || | | |||||||||||| |||| || ||| |||||||||||| ||||| ||||||||||||| || |
|
|
| T |
25678030 |
attttgggcattgtttgtgaagctccaacatgct--ggcctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattg |
25678127 |
T |
|
| Q |
341 |
ggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcc |
421 |
Q |
| |
|
| |||||||||||||||| ||||||||||| ||| || ||| |||| || | ||||||| |||||||||||||||| |
|
|
| T |
25678128 |
gattgcaccggaggtccaccgaaaatttgctttcatttcagtggctttttccacgacacaacatctctcttctatctttcc |
25678208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 371
Target Start/End: Original strand, 25391406 - 25391534
Alignment:
| Q |
242 |
attttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctg |
340 |
Q |
| |
|
||||||||||||||| |||||||||| ||| | | |||||||||||| |||| || || |||||||||||| |||| |||||||||||||| || |
|
|
| T |
25391406 |
attttgggcattgtttatgaagctccaaagtgct--ggcctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattg |
25391503 |
T |
|
| Q |
341 |
ggttgcaccggaggtccattgaaaatttgct |
371 |
Q |
| |
|
| |||||||||||||||| ||||||||||| |
|
|
| T |
25391504 |
gattgcaccggaggtccaccgaaaatttgct |
25391534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 25358412 - 25358553
Alignment:
| Q |
281 |
ctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgctctcaaggc |
379 |
Q |
| |
|
||||||||||| |||| || || |||||||||||| |||| |||||||||||||| ||| |||||||||||||||| ||||||||||| ||| | |
|
|
| T |
25358412 |
ctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttc |
25358511 |
T |
|
| Q |
380 |
aatggtttttgtcatggcacaacaattctcttctatctttcc |
421 |
Q |
| |
|
| || |||| || ||||||||| |||||||||||||||| |
|
|
| T |
25358512 |
agtgactttttccacggcacaacatctctcttctatctttcc |
25358553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 3364 - 3287
Alignment:
| Q |
239 |
ataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttcggacacgcagttgtgtaaac |
317 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||||| |||||||||||||| ||||| |||||| | |||| ||||| |
|
|
| T |
3364 |
ataattttggacattatttgtgaagctccatcgtgtt-tgacctcgagtgcacgggttcagacacgaaattgtataaac |
3287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 40709194 - 40709267
Alignment:
| Q |
280 |
cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccgga |
352 |
Q |
| |
|
||||||||||| ||||| |||| ||||| |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
40709194 |
cctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccgga |
40709267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 27049173 - 27049206
Alignment:
| Q |
300 |
acacgcagttgtgtaaactttggagagcaaaacc |
333 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
27049173 |
acacgtagttgtgtaaactttggagagcaaaacc |
27049206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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