View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20670_low_2 (Length: 486)
Name: NF20670_low_2
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20670_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 33989976 - 33990418
Alignment:
| Q |
16 |
atgagacaagagatgacagcaaagaaaaggacagttgcattacataattattataacctgacagaaacagaaacagaaactgaaacagtatgcacgagaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33989976 |
atgagacaagagatgacagcaaagaaaaggacagttgcattacataattattataacctgacagaaacagaaa------------cagtatgcacgagaa |
33990063 |
T |
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| Q |
116 |
gagaaacagtagcatctcaagagggtccaaacaaccataataaaaaggtggtgagtgagtgactgaaaatatacagcaaaaactaatatggcgcagttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990064 |
gagaaacagtagcatctcaagagggtccaaacaaccataataaaaaggtggtgagtgagtgactgaaaatatacagcaaaaactaatatggcgcagttga |
33990163 |
T |
|
| Q |
216 |
atgcaattcttacatactcatccccagctattgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatcnnnn |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990164 |
atgcaattcttacatactcatccccagctattgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatctttt |
33990263 |
T |
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| Q |
316 |
nnngtgtgcaaatatttcatcttgcagattatataaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgt |
415 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990264 |
tttgtgtgcaaatatttcatcttgcagattatacaaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgt |
33990363 |
T |
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| Q |
416 |
tgtttactgtgttttatgattgtagagcacctgctgcatcaccggttctgccagg |
470 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990364 |
tgtttactatgttttatgattgtagagcacctgctgcatcaccggttctgccagg |
33990418 |
T |
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