View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20670_low_5 (Length: 339)

Name: NF20670_low_5
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20670_low_5
NF20670_low_5
[»] chr2 (7 HSPs)
chr2 (1-330)||(2350614-2350943)
chr2 (1-330)||(2330308-2330637)
chr2 (1-330)||(2326593-2326922)
chr2 (1-330)||(2320739-2321068)
chr2 (1-300)||(2303068-2303367)
chr2 (16-300)||(2309786-2310070)
chr2 (16-284)||(2293471-2293739)
[»] chr8 (1 HSPs)
chr8 (13-275)||(41126675-41126934)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 2350943 - 2350614
Alignment:
Q  1 atccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350943 atccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcag 2350844  T
Q  101 gcaactccaactccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2350843 gcaactccaactccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcgctctaatcagcggaag 2350744  T
Q  201 caaaacatcttcttgatcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttttggccagaaatttattatattgaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2350743 caaaacatcttcttgatcctttcgtaacttcaacaactcttcccatcgtttgcaaaacaaaatccgagtaacttttggccagaaatttattatattgaat 2350644  T
Q  301 ttgttaacactcaacagaattgtcctttgt 330  Q
    ||||||||||||||||||||||||||||||    
T  2350643 ttgttaacactcaacagaattgtcctttgt 2350614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 2330637 - 2330308
Alignment:
Q  1 atccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcag 100  Q
    |||||||||||||| ||||||||||||||  | ||| | ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| | ||    
T  2330637 atccattgcaaagcggtggaagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcctgag 2330538  T
Q  101 gcaactccaactccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaag 200  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||  |||| |||||||||||||||||| ||||| ||||||||| |||| |||||||||||    
T  2330537 gcaactccaactccataagagtatctacatacgaaacaacagtattaatattgttcaatctactctccttaacatgcttcctcgctcttatcagcggaag 2330438  T
Q  201 caaaacatcttcttgatcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttttggccagaaatttattatattgaat 300  Q
    || ||||||||||||||| ||  | ||||||  |||||| |||||| |||| || ||||||||||  |||||||| ||||||||||| | |||||| |||    
T  2330437 cagaacatcttcttgatctttaagcaacttcgccaactcatcccatcgtttacgcaacaaaatccttgtaactttcggccagaaattcagtatattaaat 2330338  T
Q  301 ttgttaacactcaacagaattgtcctttgt 330  Q
     || ||| | |||||||||| |||||||||    
T  2330337 ctgctaaaattcaacagaatcgtcctttgt 2330308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 2326922 - 2326593
Alignment:
Q  1 atccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcag 100  Q
    ||||| |||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| ||    |    
T  2326922 atccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttccgtttttccattg 2326823  T
Q  101 gcaactccaactccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaag 200  Q
    ||||||||||||||||||| |||||||| || ||||| ||||  ||| ||||||||||| || |||| ||||||||||||||| |||| |||||||||||    
T  2326822 gcaactccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttagtctccttaacttgcttcctccctcttatcagcggaag 2326723  T
Q  201 caaaacatcttcttgatcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttttggccagaaatttattatattgaat 300  Q
    ||||||||||||||||||  | || ||| ||||||| || ||||||||||| || ||||||||||  | |||||||||||||||||  | ||||||||||    
T  2326722 caaaacatcttcttgatctctacgcaacatcaacaattcctcccattgtttacgcaacaaaatccatgcaacttttggccagaaatgcagtatattgaat 2326623  T
Q  301 ttgttaacactcaacagaattgtcctttgt 330  Q
     || ||||  |||||| || ||||||||||    
T  2326622 ctgctaaccttcaacaaaagtgtcctttgt 2326593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 2321068 - 2320739
Alignment:
Q  1 atccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcag 100  Q
    ||||| |||||||| ||||||||||||||  ||||| | ||||||||||| ||||||||| ||||||||||||  |||||||| || |||||||| || |    
T  2321068 atccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgg 2320969  T
Q  101 gcaactccaactccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaag 200  Q
    ||||||||||||| |||||||||||  |||||||||| || |  ||| ||||||||||| ||||||| ||||||||||||||  |||| |||||||||||    
T  2320968 gcaactccaactctaaaagagtatctgcatacgaaacaactgtattatcattgttcaatttactctccttaacttgcttccttgctcttatcagcggaag 2320869  T
Q  201 caaaacatcttcttgatcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttttggccagaaatttattatattgaat 300  Q
    || |||||| |||||||||||  |||||||||| ||||| |||||| | || || ||||||||||  ||| |||| ||||| ||||| | ||||||||||    
T  2320868 cagaacatcctcttgatccttaagtaacttcaaaaactcctcccatcggttacgcaacaaaatccttgtacctttcggccaaaaattcagtatattgaat 2320769  T
Q  301 ttgttaacactcaacagaattgtcctttgt 330  Q
     || ||| | ||||||||||||||||||||    
T  2320768 ctgctaatattcaacagaattgtcctttgt 2320739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 2303367 - 2303068
Alignment:
Q  1 atccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcag 100  Q
    |||||||||||||  ||||||||||||||  ||||| |||||| |||||||||||||||| ||||||||||||  |||||||| || |||||||| || |    
T  2303367 atccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgg 2303268  T
Q  101 gcaactccaactccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaag 200  Q
    ||||||||||||| | |||||||||  |||||||||| ||||  ||||||||||||||| ||||||| |||||||| |||||| |||| |||||||||||    
T  2303267 gcaactccaactctagaagagtatctgcatacgaaacaacagtattaacattgttcaatttactctccttaacttgtttcctcgctcttatcagcggaag 2303168  T
Q  201 caaaacatcttcttgatcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttttggccagaaatttattatattgaat 300  Q
     | |||||| |||||||||||  |||||||||| ||||| | |||| | || || ||||||||||  |||||||| ||||||||||| | ||||||||||    
T  2303167 tagaacatcctcttgatccttaagtaacttcaaaaactccttccatcggttacgcaacaaaatccttgtaactttcggccagaaattcagtatattgaat 2303068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 2310070 - 2309786
Alignment:
Q  16 gtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactccaactcca 115  Q
    ||||||||||| ||| ||||| | ||||||||||||||||||||| ||||||||||||  |||||||  ||||||||||| |||||| |||| ||||| |    
T  2310070 gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctactctaactcta 2309971  T
Q  116 aaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaagcaaaacatcttcttg 215  Q
    ||||||||||  |||| ||||| ||||  ||||||||||||||| ||||||| ||||||||||||||  |||| ||||||||||||| |||||| |||||    
T  2309970 aaagagtatctgcatatgaaacaacagtattaacattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttg 2309871  T
Q  216 atcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttttggccagaaatttattatattgaat 300  Q
    ||||||  |||||||||| ||||| |||||||| || ||  |||||||||  |||||||| ||||||||||| | | ||||||||    
T  2309870 atccttaagtaacttcaaaaactcctcccattggttacgcgacaaaatccttgtaactttcggccagaaattcagtttattgaat 2309786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 2293739 - 2293471
Alignment:
Q  16 gtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactccaactcca 115  Q
    ||||||||||| ||| ||||| | ||||||||||||||||||||| ||||||||||||  |||||||  ||||||||||| |||||| |||| ||||| |    
T  2293739 gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggccactctaactcta 2293640  T
Q  116 aaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaagcaaaacatcttcttg 215  Q
    | ||||||||  |||| ||||| ||||  |||| |||||||||| ||||||| ||||||||||||||  |||| ||||||||||||| |||||| |||||    
T  2293639 agagagtatctgcatatgaaacaacagtattaatattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttg 2293540  T
Q  216 atcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttttggccagaa 284  Q
    ||||||  |||||||||| ||||| |||||||| || || ||||||||||  |||||||| ||||||||    
T  2293539 atccttaagtaacttcaaaaactcctcccattggttacgcaacaaaatccttgtaactttcggccagaa 2293471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 41126934 - 41126675
Alignment:
Q  13 gccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactccaact 112  Q
    |||||||| || || ||| | |||||||||||||||||||||||||| || |||||||||||||||||||  || |||||||| || ||||||||||| |    
T  41126934 gccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcctcgggcaactccaatt 41126835  T
Q  113 ccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcactctaatcagcggaagcaaaacatcttc 212  Q
    |||||||||||||  |||| ||||| |||  |||    ||| ||||||| || || ||  ||| ||||||| |||| || |||||||| | |||||||||    
T  41126834 ccaaaagagtatctgcataggaaacaacattgtt---tttgctcaatctcctttccttggcttccttcctcgctcttattagcggaagtagaacatcttc 41126738  T
Q  213 ttgatcctttcgtaacttcaacaactcttcccattgtttgcgaaacaaaatccgagtaacttt 275  Q
    |||||| ||||| ||||||||||| || |||||| |||| || || ||||||||||| |||||    
T  41126737 ttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcacttt 41126675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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