View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20670_low_6 (Length: 319)
Name: NF20670_low_6
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20670_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 3077672 - 3077802
Alignment:
| Q |
19 |
attttgaagcataataaacgagtaatcaacccacttaaacaactccaaccaaacccctctcgctaccgagcaatgcacaaagaggtgagttcatttttcc |
118 |
Q |
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| T |
3077672 |
attttgaagcataataaacgagtaattgacccacttaaacaactccaaccaaacccctctcgctaccaagcaatgcacagagaggtgagttcatttttcc |
3077771 |
T |
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| Q |
119 |
gtatcgacttcacacaacgcacaagaaagca |
149 |
Q |
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| T |
3077772 |
gtatcgacttcacacaacgcacaagaaagca |
3077802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 3077829 - 3077923
Alignment:
| Q |
212 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac---cttctcctccacactccaattgttctct |
303 |
Q |
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| T |
3077829 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacaccctcttctcctctacactccaattgttctct |
3077923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 44692825 - 44692722
Alignment:
| Q |
163 |
agggcattcctcctactaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaa |
262 |
Q |
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| T |
44692825 |
agggcattccttctacgaagattccaccgcgtcggaatacgatcaagcaaaactttccaagaaagggccaccacttttgacggagccgggcttttccaaa |
44692726 |
T |
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| Q |
263 |
gttg |
266 |
Q |
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|||| |
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| T |
44692725 |
gttg |
44692722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 15316260 - 15316226
Alignment:
| Q |
229 |
gccaccaccttagacggagccggacttttccaaag |
263 |
Q |
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| T |
15316260 |
gccacaaccttagacggagccggacttttccaaag |
15316226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 34866382 - 34866509
Alignment:
| Q |
178 |
ctaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac-- |
275 |
Q |
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| T |
34866382 |
ctaagattcaatcgcgacggaatacgatcaagcaagactttccaagaaagggccaccacttttgagggggccgggcttttccaaagttggagaaacactc |
34866481 |
T |
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| Q |
276 |
-cttctcctccacactccaattgttctc |
302 |
Q |
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| T |
34866482 |
tcaactcctccacactccaattgttctc |
34866509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 14248764 - 14248813
Alignment:
| Q |
218 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgg |
267 |
Q |
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| T |
14248764 |
tccaagaaagagccaccgccttagacggagccggactcttccaaatttgg |
14248813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 5008679 - 5008743
Alignment:
| Q |
208 |
agcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
272 |
Q |
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| T |
5008679 |
agcaaaaccttccaagagagtgccaccaccttcaaaggagccggattcttccaaagttgcgtaaa |
5008743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 47337317 - 47337409
Alignment:
| Q |
180 |
aagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
272 |
Q |
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| T |
47337317 |
aagattcaaacgggtcggtatacgattaagcaaagatctccaagagagcgccaccaccttagaaggagccgggctcttccaaacttggctaaa |
47337409 |
T |
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