View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20670_low_8 (Length: 227)
Name: NF20670_low_8
Description: NF20670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20670_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11177385 - 11177165
Alignment:
| Q |
1 |
cccgacgacttcttcggtcttcctctaccacgttgtggcactgcctcaatgtcgcccccattcaaatttctcttcaatcctttgttgccgccactattat |
100 |
Q |
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| T |
11177385 |
cccgacgccttcttcggtctgcctctaccacgttgcggcactgcctcaatgtcgcccccattcaaatttctcttcaatcctttgttgccgccactattat |
11177286 |
T |
|
| Q |
101 |
tattaactaccttcnnnnnnngattatcatcaagcaccatcatatcaaaattttctatcgcaggtctattatcaatatcaacaacaccttcagcttcagt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177285 |
tattaactaccttctttttttgattatcatcaagcaccatcatatcaaaattttctatcgcaggtctattatcaatatcaacaacaccttcagcttcagt |
11177186 |
T |
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| Q |
201 |
ttccatcatcgaagccacact |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11177185 |
ttccatcatcgaagccacact |
11177165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 11157576 - 11157449
Alignment:
| Q |
53 |
cgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactaccttcnnnnnnngattatcatcaagcaccatcatatcaaaatt |
152 |
Q |
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||||||||||| | ||||||||||| |||||||||| ||||| |||||||||||| ||||| ||||||||||| ||||||||| |||||||| |
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| T |
11157576 |
cgcccccattccagtttctcttcaaacctttgttgctgccaccattattattaaccacctt---------attatcatcaaacaccatcatttcaaaatt |
11157486 |
T |
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| Q |
153 |
ttctatcgcaggt---ctattatcaatatcaacaaca |
186 |
Q |
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| T |
11157485 |
ttcaatcgcaggtttgttgttatcaatatcaacaaca |
11157449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 11164515 - 11164365
Alignment:
| Q |
53 |
cgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactaccttcnnnnnnngattatcatcaagcaccatcatatcaaaatt |
152 |
Q |
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||||||||||| | ||||||||||| |||||| ||| ||||| |||||||||||| ||||| |||||| |||| |||||||||||||||| | |
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| T |
11164515 |
cgcccccattcgagtttctcttcaaacctttgctgctgccaccattattattaaccacctt---------attatcgtcaaacaccatcatatcaaaagt |
11164425 |
T |
|
| Q |
153 |
ttctatcgcaggtctattatcaatatcaacaacaccttcagcttcagtttccatcatcgaagccacact |
221 |
Q |
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||| ||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
11164424 |
ttcaatcccaggtttgttatcaacatcaacaa---------cttcagtttccatcatcgaagccacact |
11164365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 4703618 - 4703723
Alignment:
| Q |
9 |
cttcttcggtcttcctctaccacgttgtggcactgcctcaatgtcgcc---cccattcaaatttctcttcaatcctttgttgccgccactattattatta |
105 |
Q |
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|||||||||||| ||||||||||| | ||| ||||||||||| || |||||| | ||||||||||| |||||||||| ||||| |||||||||| |
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| T |
4703618 |
cttcttcggtctgcctctaccacgccgcggc---gcctcaatgtctcctcccccatttgagtttctcttcaaacctttgttgcagccaccattattatta |
4703714 |
T |
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| Q |
106 |
actaccttc |
114 |
Q |
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||||||||| |
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|
| T |
4703715 |
actaccttc |
4703723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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