View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_high_11 (Length: 404)
Name: NF20671_high_11
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_high_11 |
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| [»] scaffold1717 (1 HSPs) |
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| [»] scaffold1527 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 37757269 - 37757501
Alignment:
| Q |
13 |
catcatcatcagcatcatgatactcatcttcatgttcttcctcaataacaggatgaagttcaactttttcaccatcattcccttcaactccggcgccgcc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37757269 |
catcatcatcagcatcatgatactcatcttcatgttcttcctcaataacaggatgaagttcaactttttcaccatcattcccttcaactccggcgccacc |
37757368 |
T |
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| Q |
113 |
gccattactctcctccggataccttacaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757369 |
gccattactctcctccggataccttacaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctc |
37757468 |
T |
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| Q |
213 |
ttcgtcgcaccgaatccacggcttcccataatc |
245 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37757469 |
ttcgtcgcaccgaatccacggcttcccataatc |
37757501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 39326726 - 39326828
Alignment:
| Q |
284 |
gtccttgatctcaaattaaccttttcttttttaccttcttcttgtataaaatactat-agtcacgggttatggtccaaaaaataaagttatgatagtacc |
382 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39326726 |
gtccttgatctcaaattaaccttttctttttttccttcttcttgtataaaatactataagtcacgggttatggtccaaaaaataaagttatgatagtacc |
39326825 |
T |
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| Q |
383 |
ata |
385 |
Q |
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||| |
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| T |
39326826 |
ata |
39326828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1717 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1717
Description:
Target: scaffold1717; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 397 - 460
Alignment:
| Q |
138 |
acaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccat |
201 |
Q |
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| T |
397 |
acaacaacaacaggacaaacacaatgatgcacacagtaatcactaacactcccaagcttcccat |
460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1527 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1527
Description:
Target: scaffold1527; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 643 - 706
Alignment:
| Q |
138 |
acaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccat |
201 |
Q |
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||||| ||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||||||| |
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| T |
643 |
acaacaacaacaggacaaacacaatgatgcacacagtaatcactaacactcccaagcttcccat |
706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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