View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_high_12 (Length: 401)
Name: NF20671_high_12
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 31762625 - 31763007
Alignment:
| Q |
1 |
accgtgagcttttgtggcggttggtgatccgcgtcctcaatgatctgaacagcggattcatgatccaaagatgatagagattcgaaggaagaattggaag |
100 |
Q |
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| T |
31762625 |
accgtgagcttttgtggctgttggtgatccgcgtcctcaatgatctgaacagcggattcatgatccaaagatgatagaggtttgaaggaagaattggaag |
31762724 |
T |
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| Q |
101 |
acagagaaagtaaaggataattatccgcgaatgatccaataatctgagaaaatatttgatagaagaaaccaaaccaactcaacactgccttccatgcttg |
200 |
Q |
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| T |
31762725 |
acaaagaaagtaaaggataattatccgcgaatgatccaataatctgagaaaatatttgatagaagaaaccaaaccaactcaacactgccttccatgcttg |
31762824 |
T |
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| Q |
201 |
ctgagttatcggtgagtacatgacaatcaacaatgttatgttataccttaaaataatttgtttaaggtttgtgatgtagcttgatgcatacgctattaaa |
300 |
Q |
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| T |
31762825 |
ctgagttattggtgagtacatgacaatcaacaatgttatgttataccttaaaataatttgtttaaggtttgtgatgtagcttgatgcatacgctattaaa |
31762924 |
T |
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| Q |
301 |
tattaacgtttgtttcactcaccttttgtttctcaatatattttgttggtttgttatgtgagagattttgagagagatggggt |
383 |
Q |
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| T |
31762925 |
tattaacgtttgtttcactcaccttttgtttctcaatatattttgttggtttgttatgtgagagattttgagagagatggggt |
31763007 |
T |
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