View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_high_14 (Length: 388)
Name: NF20671_high_14
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 36605754 - 36605901
Alignment:
| Q |
235 |
catgttaatataggtagttaaaatacatatatattgggaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag |
334 |
Q |
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| T |
36605754 |
catgttaatgtaggtagttaaaatacatatatactgtaaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag |
36605853 |
T |
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| Q |
335 |
attgtagaatcaaaatgatgttccactatttgattgagattcatttca |
382 |
Q |
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| T |
36605854 |
attgtagaatcaaaatgatgttttactatttgattgagattcagttca |
36605901 |
T |
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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 32649746 - 32649635
Alignment:
| Q |
271 |
ggaattgaatagagtaaattaatataggcaaatgggggaaaa-tttgaggaatgaaaactaatagattgtagaatcaaaatgatgttccactatttgatt |
369 |
Q |
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||||| ||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||| || ||||||| |
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| T |
32649746 |
ggaatggaagagagttaattaatataggcaaatgtgggaaaaatttgaggaatgaaaactaatagattatagaatgaaaattatgttcc-ctgtttgatt |
32649648 |
T |
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| Q |
370 |
gagattcatttca |
382 |
Q |
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| T |
32649647 |
gacattcagttca |
32649635 |
T |
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