View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_high_2 (Length: 624)
Name: NF20671_high_2
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 10 - 598
Target Start/End: Complemental strand, 31407894 - 31407305
Alignment:
| Q |
10 |
agatgaacttgccgtcggattttatccattgttttaaaaattagaccggagatcagatgaatgagacttaaaggatcacggattaacttattcaatgagt |
109 |
Q |
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| T |
31407894 |
agatgaacttgccgttggattttattcattgttttaaaaattagaccggagatcaaatgaatgagacttaaagggtcacggattaacttattcaatgagt |
31407795 |
T |
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| Q |
110 |
tcctagggatgaacaatatttcttgtgga------gaaacgagcaaatgaactgtttgaatcacaatataatgaaattgaaaccaagattatgtgaaagt |
203 |
Q |
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| T |
31407794 |
tcctagggatgaacaatatttcttgtggacttatagaaacgagcaaatgaactgtt-----cacaatatgatgaaattgaaaccaagattatgtgaaagt |
31407700 |
T |
|
| Q |
204 |
gatatttgattttgtcaattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagcttgaaattgagtatgacgaacaggacg |
303 |
Q |
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| T |
31407699 |
gatatttgattgtgtgaattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagcttgaaattgagtatgatgaacaggacg |
31407600 |
T |
|
| Q |
304 |
actatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctga |
403 |
Q |
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| T |
31407599 |
actatgtagtgatcaagcatgctgctctcttcacttccaccatcatgagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctga |
31407500 |
T |
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| Q |
404 |
ggatttgattgtgaagaatggaagagttggcggtgttgtcactaattgggctttggtttcaatgaaccatgacactcaatcttgcatggacccaaatgtt |
503 |
Q |
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| T |
31407499 |
ggatttgattgtgaagaatgaaagagttggtggtgttgtcactaactgggctttggtttcaatgaaccatgacactcaatcctgcatggacccaaatgtt |
31407400 |
T |
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| Q |
504 |
atggagtctaaagtggtggtgagttcttgtggccatgatggtccttttggagccactggtgtgaagaggctcaagagtattggtttgattgatac |
598 |
Q |
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| T |
31407399 |
atggagtctaaagttgtggttagctcttgtggccatgatggtccttttggagccactggtgtgaagaggctcaagagtattggtttgattgatac |
31407305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 283 - 596
Target Start/End: Complemental strand, 47481722 - 47481409
Alignment:
| Q |
283 |
ttgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagct |
382 |
Q |
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| T |
47481722 |
ttgaatatgacgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaatgtaaaact |
47481623 |
T |
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| Q |
383 |
tttcaatgctgtagctgctgaggatttgattgtgaagaatggaagagttggcggtgttgtcactaattgggctttggtttcaatgaaccatgacactcaa |
482 |
Q |
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| T |
47481622 |
tttcaatgctgttgctgctgaggatttgattgtgaaggaaaacagagttgctggtgttgttacaaactgggctttggtttcgatgaaccatgatacacaa |
47481523 |
T |
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| Q |
483 |
tcttgcatggacccaaatgttatggagtctaaagtggtggtgagttcttgtggccatgatggtccttttggagccactggtgtgaagaggctcaagagta |
582 |
Q |
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| T |
47481522 |
tcttgcatggatcctaatgttatggaagctaaggttgttgtgagttcttgtggacatgatggtccttttggtgctactggtgttaagaggttgaagagta |
47481423 |
T |
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| Q |
583 |
ttggtttgattgat |
596 |
Q |
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| T |
47481422 |
ttggcatgattgat |
47481409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 4220543 - 4220584
Alignment:
| Q |
315 |
atcaagcacgctgctctcttcacttccacaatcatgagcaag |
356 |
Q |
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| T |
4220543 |
atcaagcacgctgctctcttaacttccacaatcatgagcaag |
4220584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 4220463 - 4220500
Alignment:
| Q |
92 |
ttaacttattcaatgagttcctagggatgaacaatatt |
129 |
Q |
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| T |
4220463 |
ttaacttattcaatgagttcatagggatgaacaatatt |
4220500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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