View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20671_high_3 (Length: 580)

Name: NF20671_high_3
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20671_high_3
NF20671_high_3
[»] chr3 (9 HSPs)
chr3 (305-564)||(1739482-1739739)
chr3 (18-220)||(1739824-1740026)
chr3 (18-192)||(1718514-1718688)
chr3 (18-160)||(1750257-1750399)
chr3 (24-165)||(1755316-1755457)
chr3 (470-564)||(1718012-1718106)
chr3 (460-564)||(1754946-1755050)
chr3 (460-564)||(1749331-1749435)
chr3 (421-450)||(38733119-38733148)
[»] chr8 (1 HSPs)
chr8 (18-149)||(38088448-38088579)
[»] chr7 (1 HSPs)
chr7 (420-450)||(39145652-39145682)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 305 - 564
Target Start/End: Complemental strand, 1739739 - 1739482
Alignment:
Q  305 agtaacattaatcgtcattttactacaatagtcattgagcggatttaaattatatacttttaagttataaaaggttaaactcttgccattaaacaacacg 404  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739739 agtaacattaatcgtcattttactgcaatagtcattgagcggatttaaattatatacttttaagttataaaaggttaaactcttgccattaaacaacacg 1739640  T
Q  405 tgannnnnnnnnnnnaaaacttggtatctgattcaagaatcgactactaatcaagtatatctttgtaacttgcagtaggcatgggatgaaagtgattgtg 504  Q
    ||              ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739639 tgtttttttttttt--aaacttggtatctgattcaagaatcaactactaatcaagtatatctttgtaacttgcagtaggcatgggatgaaagtgattgtg 1739542  T
Q  505 gacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagagatgga 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739541 gacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagagatgga 1739482  T

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Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 1740026 - 1739824
Alignment:
Q  18 agatttatgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttgggggatctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1740026 agatttatgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttgggggagctt 1739927  T
Q  118 tggctgcacttgacaatgctttcacatgggcatagtaagtctttgagatgtatttaaattttaaactgtaacacataacatgtaacgtgccctttagtgc 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1739926 tggcagcacttgacaatgctttcacatgggcatagtaagtctttgagatgtatttaaattttaaattgtaacacataacatgtaacgtgccctttagtgc 1739827  T
Q  218 aac 220  Q
    |||    
T  1739826 aac 1739824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 1718688 - 1718514
Alignment:
Q  18 agatttatgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttgggggatctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||    
T  1718688 agatttatgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagcccaagatccaaacccacctaagcctttcgttgggggagctt 1718589  T
Q  118 tggctgcacttgacaatgctttcacatgggcatagtaagtctttgagatgtatttaaattttaaactgtaacaca 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1718588 tggcagcacttgacaatgctttcacatgggcatagtaagtctttgagatgtatttaaattttaaattgtaacaca 1718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 1750399 - 1750257
Alignment:
Q  18 agatttatgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttgggggatctt 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||| |    
T  1750399 agatttatgtcacaaaatggattagatgcagtcagaatacctgttggatggtggatagcctatgatccaaatccacctaagccttttgttggaggatcct 1750300  T
Q  118 tggctgcacttgacaatgctttcacatgggcatagtaagtctt 160  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  1750299 tggctgcacttgacaatgcttttacatgggcacagtaagtctt 1750257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 1755457 - 1755316
Alignment:
Q  24 atgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttgggggatctttggctg 123  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |    
T  1755457 atgtcacaaaatggattaaatgcagtgagaatacctgttggatggtggatagctcaagatccaaacccacctaagccttttgttggaggatcattggcag 1755358  T
Q  124 cacttgacaatgctttcacatgggcatagtaagtctttgaga 165  Q
    || | ||||||||||||||||||||| |||||||||||||||    
T  1755357 cattagacaatgctttcacatgggcacagtaagtctttgaga 1755316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 470 - 564
Target Start/End: Complemental strand, 1718106 - 1718012
Alignment:
Q  470 taacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagagatgga 564  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  1718106 taacttgcagtaagcatgggatgaaagtgattgtggatttgcatgcagttgaaggttctcaaaatggttttgagcatagtgggacaagagatgga 1718012  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 460 - 564
Target Start/End: Complemental strand, 1755050 - 1754946
Alignment:
Q  460 tatatctttgtaacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagag 559  Q
    ||||||||||||| || ||| |  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||| || ||||| |||||||    
T  1755050 tatatctttgtaatttacagaatccatgggatgaaagtgattgtggacttgcatgcagttgaaggttctcaaaatggtaatgatcacagtggaacaagag 1754951  T
Q  560 atgga 564  Q
    |||||    
T  1754950 atgga 1754946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 564
Target Start/End: Complemental strand, 1749435 - 1749331
Alignment:
Q  460 tatatctttgtaacttgcagtaggcatgggatgaaagtgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagag 559  Q
    ||||||||| ||| |||||| |  |||| ||||||||||||||| || ||||||||  |||||||||||||||||||   ||| |||||||| |||||||    
T  1749435 tatatctttctaaattgcagaaatcatgagatgaaagtgattgtagatttgcatgctgttgaaggttctcaaaatggcaatgaacatagtggaacaagag 1749336  T
Q  560 atgga 564  Q
    |||||    
T  1749335 atgga 1749331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 450
Target Start/End: Complemental strand, 38733148 - 38733119
Alignment:
Q  421 aaacttggtatctgattcaagaatcgacta 450  Q
    ||||||||||||||||||||||||||||||    
T  38733148 aaacttggtatctgattcaagaatcgacta 38733119  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 38088579 - 38088448
Alignment:
Q  18 agatttatgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttgggggatctt 117  Q
    ||||| |||||| ||||||| ||| ||||||| ||||| || || || |||||||||||| | || ||||  || |||||||| |||||||| ||||| |    
T  38088579 agattcatgtcagaaaatgggttaaatgcagtcagaattcccgtggggtggtggatagctaaggacccaacaccccctaagccatttgttggaggatcct 38088480  T
Q  118 tggctgcacttgacaatgctttcacatgggca 149  Q
    ||    ||||||||||||| ||||||||||||    
T  38088479 tgaaaacacttgacaatgccttcacatgggca 38088448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 450
Target Start/End: Original strand, 39145652 - 39145682
Alignment:
Q  420 aaaacttggtatctgattcaagaatcgacta 450  Q
    |||||||||||||||||||||||||||||||    
T  39145652 aaaacttggtatctgattcaagaatcgacta 39145682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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