View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20671_high_33 (Length: 243)

Name: NF20671_high_33
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20671_high_33
NF20671_high_33
[»] chr8 (1 HSPs)
chr8 (13-224)||(28959884-28960095)
[»] chr1 (1 HSPs)
chr1 (13-224)||(7760470-7760681)
[»] chr3 (4 HSPs)
chr3 (13-225)||(52953598-52953807)
chr3 (13-225)||(31903719-31903928)
chr3 (13-212)||(31673624-31673820)
chr3 (118-225)||(31921956-31922063)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 28960095 - 28959884
Alignment:
Q  13 aatatcaaaccccattctaattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28960095 aatatcaaaccccattctaattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctca 28959996  T
Q  113 tttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28959995 tttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaa 28959896  T
Q  213 aagtgttattac 224  Q
    ||||||||||||    
T  28959895 aagtgttattac 28959884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 7760681 - 7760470
Alignment:
Q  13 aatatcaaaccccattctaattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7760681 aatatcaaaccccattctaattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctca 7760582  T
Q  113 tttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7760581 tttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaa 7760482  T
Q  213 aagtgttattac 224  Q
    ||||||||||||    
T  7760481 aagtgttattac 7760470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 52953807 - 52953598
Alignment:
Q  13 aatatcaaaccccattctaattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctca 112  Q
    ||||||||| || |||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||| | ||||| ||||| || |||||||||    
T  52953807 aatatcaaatcctattctaattccaccatttcctaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctca 52953708  T
Q  113 tttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaa 212  Q
    | |   ||| ||||||||||||| ||||  |  ||| ||||| |||||||||| || |||||||| |||||| |||||||| | ||||||||||||||||    
T  52953707 tat---ccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa 52953611  T
Q  213 aagtgttattact 225  Q
     ||| || |||||    
T  52953610 cagttttgttact 52953598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 31903719 - 31903928
Alignment:
Q  13 aatatcaaaccccattctaattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctca 112  Q
    ||||||||| || |||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||| | ||||| ||||| || |||||||||    
T  31903719 aatatcaaatcctattctaattccaccatttcctaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctca 31903818  T
Q  113 tttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaa 212  Q
    |    |||| ||||||||||||| ||||  |  ||| | ||| |||||||||| || |||||||| |||||| |||||||| | ||||||||||||||||    
T  31903819 t---aaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa 31903915  T
Q  213 aagtgttattact 225  Q
     ||| || |||||    
T  31903916 cagttttgttact 31903928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 31673820 - 31673624
Alignment:
Q  13 aatatcaaaccccattctaattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctca 112  Q
    ||||||||| || |||||||||||||||||||||||||| ||||||||| |||| | ||||||||| |||||| | ||||| ||||| || |||||||||    
T  31673820 aatatcaaatcctattctaattccaccatttcctaatgccaaaacatcagcaacaagaaaatcattcttacttctagacttaacaaacctttgattctca 31673721  T
Q  113 tttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaa 212  Q
    |    |||| ||||||||||||| ||||  |  ||| | ||| |||||||||| || |||||||| |||||| |||||||| | ||||||||||||||||    
T  31673720 t---aaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa 31673624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 31921956 - 31922063
Alignment:
Q  118 accactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaaaagtg 217  Q
    |||| ||||||||||||| ||||  |  ||| | ||| |||||||||| || |||||||| |||||| |||||||| | |||||||||||||||| |||     
T  31921956 accattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagtt 31922055  T
Q  218 ttattact 225  Q
    || |||||    
T  31922056 ttgttact 31922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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