View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_high_5 (Length: 507)
Name: NF20671_high_5
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 9e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 309 - 495
Target Start/End: Original strand, 28114015 - 28114201
Alignment:
| Q |
309 |
aacaatccatctattgctcattcaatataactaaaaataacaacaatatttagaaacatagtaagagagagtgatagtgatgagtactactaaccaagcc |
408 |
Q |
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| T |
28114015 |
aacaatccatctattcctcattcaatataactaaaaataacaacaatatttagaaacatagtaagagagagtgatagtgatgagtactactaaccaagcc |
28114114 |
T |
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| Q |
409 |
aaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccactctggaagactagttttccccagaat |
495 |
Q |
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| T |
28114115 |
aaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccactctggaagactagttttccccagaat |
28114201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 28113222 - 28113452
Alignment:
| Q |
18 |
cacatcaaaccaatagaaaacatctccgccaccgattcgtctttagtattgttctttttattacatactcccttccttcactattataagcnnnnnnnnc |
117 |
Q |
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| T |
28113222 |
cacatcaaaccaatagaaaacatctccgccaccgattcgtctttagtattgttctttttattacatactcccttccttcactattataagcaaaaaag-c |
28113320 |
T |
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| Q |
118 |
atgttaaaaatttccaaaatatatatgtttggaaagttacatttggtcaatagttagttatataaattaacaagtgattatatcacaaatggatggat-t |
216 |
Q |
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| T |
28113321 |
atgttaaaaatttccaaaatatatatgtttggaaagttacatttggtcaa----tagttatataaattaacaagtgattatatcacaaatggatggatgc |
28113416 |
T |
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| Q |
217 |
ttggtggtttagctttggaatttattcgtgcaatct |
252 |
Q |
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| T |
28113417 |
ttggtggtttagctttggaatttattcgtgcaatct |
28113452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 498
Target Start/End: Original strand, 28129618 - 28129739
Alignment:
| Q |
370 |
taagagagagtgatagtgatgagtactactaaccaagccaaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccac |
469 |
Q |
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| T |
28129618 |
taagagagagtga-agtgatgagtacta---accaatgcaaatccacctctagcgcaccaagtttttg---gcatggtggtagaacgagcgccataccac |
28129710 |
T |
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| Q |
470 |
tctggaagactagttttccccagaataat |
498 |
Q |
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| T |
28129711 |
tctgggagactagttttccccagaataat |
28129739 |
T |
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