View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_high_9 (Length: 425)
Name: NF20671_high_9
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 7007685 - 7008097
Alignment:
| Q |
1 |
tatggattcccatacgttaccgacaaacttgcaccaggtgcaggtggagcaccatatggcctcccataaggatgaggaacaccataaggtgcatgatagg |
100 |
Q |
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| T |
7007685 |
tatggattcccatacgttactgacaaacttgcaccaggtgcaggtggagcaccatatggactcccataaggatgaggaacaccataaggtgcatgatagg |
7007784 |
T |
|
| Q |
101 |
ctaaattttttatgatgactttaacgccaaccgtgccttgtgggcgtccagaaggacgcttcagcttcaaagtacggctgacgcctgataagtcatcaat |
200 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007785 |
ctaaattttttatgatgactttaatgtcaaccgtgccttgtgggcgtccagaaggacgcttcagcttcaaagtacggctgacgcctgataagtcatcaat |
7007884 |
T |
|
| Q |
201 |
tttgattccatcaagtggaagttgagatgagccgataatgagtggcgacttgttattcgactctaagtggagaacgtcgatgaagacgtaacaattgttg |
300 |
Q |
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| T |
7007885 |
tttgattccatcaagtggaagttgagatgagccgataatgagtggcggcttgttattcgactctaagtggagaacatcgatgaagacgaaacaatttttg |
7007984 |
T |
|
| Q |
301 |
atggatgtcgatggtggcacaggggtgatgagtttttcattccagttgggttgagtgtcaccagatttgtcaaccttggtggaacgtttttgtgctggat |
400 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7007985 |
atggttgtcgatggtggcatagtggtgatgagtttttcattccagttgggttgagtgtcaccagatttgtcaacgttggtggaacgtttttgtgctggat |
7008084 |
T |
|
| Q |
401 |
ccacccaaacaac |
413 |
Q |
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| T |
7008085 |
cgacccaaacaac |
7008097 |
T |
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