View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20671_low_1 (Length: 692)
Name: NF20671_low_1
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 3045483 - 3045854
Alignment:
| Q |
20 |
cttccgatcgctgaaaccatggcacatgaatttggaattggatttctagaagaagtaaaaaa-gctttgtttcatgatgataagaagaaggaaaagtatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045483 |
cttccgatcgctgaaaccatggcacatgaatttggaattggatttctggaagaagtaaaaaaagctttgtttcatgatgataagaagaaggaaaagtatg |
3045582 |
T |
|
| Q |
119 |
atgagtttataaaagacatagatgatttcaagacctgcatgaagaatcatcatccaatcgtacttccagttcaagagttcaaa-aaagggtgaacgaggt |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3045583 |
atgagtttataaaagccatagatgatttcaagacctgcatgaaggatcatcatccaatcgtacttccagttcaagagttcaaagaaagggtgaacgaggt |
3045682 |
T |
|
| Q |
218 |
acttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaatgaggc |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3045683 |
acttaaagggcataaatatttaattttaggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaacgaggc |
3045782 |
T |
|
| Q |
318 |
cacgagactggttagttgttgttgctgttattattat------tactatgcaacaagagattttatcaacac |
383 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3045783 |
cacgagactggttagttgttgttattattattattattattactactatgcaacaagagattttatgaacac |
3045854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 395 - 684
Target Start/End: Original strand, 3046139 - 3046414
Alignment:
| Q |
395 |
ttccgccagttattattatgattattgtacttcacgtatgttgatgctccatccaaccccattacatagaagacattacatcaatcatacctagtggaaa |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3046139 |
ttccgccagttattattatgattattgtacttgacatatgctgatactcca----accccattacatagaagacattacatcaatcataactagtggaaa |
3046234 |
T |
|
| Q |
495 |
gacacacgtctttctccgcttccataaattaactacaatcattgagcttccaaatatggaagacttccttcatccaaccaaatcgagattcattcttccc |
594 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3046235 |
gacgcacgtctttcttcgcttccataaattaactacaatcattgagcttccaaatatggaagtcttccttcatccaaccaaatcgagattcattcttccc |
3046334 |
T |
|
| Q |
595 |
atcatatattccaagaacatctaactaacggaatgatatcctttctcaaaatccaccttcactaacaaacacccttttctacttcttttc |
684 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3046335 |
atcatatattcc----------aactaacggaatcatatcctttctcaaaatccaccttcactaacaaacacccttttctacttcttttc |
3046414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 109 - 311
Target Start/End: Complemental strand, 33468839 - 33468633
Alignment:
| Q |
109 |
gaaaagtatgatgagtttataaaagacatagatgatttcaagacctgcatgaagaatcatcatccaatcgt---acttccagttcaagagttcaaa-aaa |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| ||| |||||||| ||| | ||| |||||| |||| |||||||||| || | |||||| ||| |
|
|
| T |
33468839 |
gaaaagtatgaagagtttataaaagacatacatgcttttaagacctggatggataataatcatcgaatcaccagacttccagttaaaaaattcaaagaaa |
33468740 |
T |
|
| Q |
205 |
gggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataa |
304 |
Q |
| |
|
|| |||| ||||||||||| ||||||| |||| |||||||||||||| |||||||||||||| ||| |||| ||| |||||||| || ||||| | |
|
|
| T |
33468739 |
ggatgaataaggtacttaaaaggcataatcatttgattttgggattcaacaactacatgaagcattatcgtatcacactttcaattccaatcaatgatga |
33468640 |
T |
|
| Q |
305 |
tcaacaa |
311 |
Q |
| |
|
| ||||| |
|
|
| T |
33468639 |
tgaacaa |
33468633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 291
Target Start/End: Original strand, 34603960 - 34604149
Alignment:
| Q |
103 |
aagaaggaaaagtatgatgagtttataaaagacatagatgatttcaagacctgcatgaagaatcatcatccaatcgt---acttccagttcaagagttca |
199 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||||||||| ||| |||||| ||| |||| |||||| |||| ||||||||||||| | |||| |
|
|
| T |
34603960 |
aagagggaagagtatgaagagtttataaaagacatagatgcttttaagaccc---tgatgaatgatcatcgaatcaccagacttccagttcaaaatttca |
34604056 |
T |
|
| Q |
200 |
aaa-aagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattc |
291 |
Q |
| |
|
|| |||| |||| || |||||||||||||||| ||||||||| |||||||| |||||||||||| || |||| |||| ||| ||||||| |
|
|
| T |
34604057 |
aaggaaggatgaaaaagttacttaaagggcataatcgtttaatttttggattcaacgcctacatgaaggatcgtcgtatcacacttccaattc |
34604149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 291
Target Start/End: Original strand, 34725237 - 34725426
Alignment:
| Q |
103 |
aagaaggaaaagtatgatgagtttataaaagacatagatgatttcaagacctgcatgaagaatcatcatccaatcgt---acttccagttcaagagttca |
199 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||||||||| ||| |||||| ||| |||| |||||| |||| ||||||||||||| | |||| |
|
|
| T |
34725237 |
aagagggaagagtatgaagagtttataaaagacatagatgcttttaagaccc---tgatgaatgatcatcgaatcaccagacttccagttcaaaatttca |
34725333 |
T |
|
| Q |
200 |
aaa-aagggtgaacgaggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattc |
291 |
Q |
| |
|
|| |||| |||| || |||||||||||||||| ||||||||| |||||||| |||||||||||| || |||| |||| ||| ||||||| |
|
|
| T |
34725334 |
aaggaaggatgaaaaagttacttaaagggcataatcgtttaatttttggattcaacgcctacatgaaggatcgtcgtatcacacttccaattc |
34725426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 308
Target Start/End: Complemental strand, 30865466 - 30865192
Alignment:
| Q |
36 |
ccatggcacatgaatttggaattggatttctagaagaagtaaaaaagctt-tgtttcatgatgataagaagaaggaaaagtatgatgagtttataaaaga |
134 |
Q |
| |
|
|||||||| | |||| |||||||| |||||||| ||||||||||| || |||||||||||||||||| | ||||||||||| |||||| ||||| |
|
|
| T |
30865466 |
ccatggcaaaggaatctggaattgagtttctagaggaagtaaaaaaagttgtgtttcatgatgataagagt---ggaaagtatgatgggtttatgaaaga |
30865370 |
T |
|
| Q |
135 |
catagatgatttcaagacctgcatgaagaatcatcatccaatcgt---acttccagttcaagagttcaaa-aaagggtgaacgaggtacttaaagggcat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||| ||| || ||| |||||| || ||||| ||||| || |
|
|
| T |
30865369 |
catagatgatttcaagacctgcatgaagaatgatcatcaaatcatcatacttccagttcaagaattctaacaaaaggtgaatgatgtactcaaaggccag |
30865270 |
T |
|
| Q |
231 |
aaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaa |
308 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
30865269 |
aaacatttaatcttgggattcaacacctacatgaagcattatcgaatcagactgccaatcccagtcgatgatcatcaa |
30865192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 115 - 293
Target Start/End: Complemental strand, 38868965 - 38868786
Alignment:
| Q |
115 |
tatgatgagtttataaaagacatagatgatttcaagacctgcatgaagaatcatcatccaatcgtacttccagttcaagagttcaaa-aaagggtgaacg |
213 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||| | || ||||||||||||||| |||||| ||| |||||| | |
|
|
| T |
38868965 |
tatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatg |
38868866 |
T |
|
| Q |
214 |
aggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattcca |
293 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
38868865 |
aggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattcca |
38868786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 302
Target Start/End: Original strand, 39046734 - 39046822
Alignment:
| Q |
214 |
aggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgat |
302 |
Q |
| |
|
|||||||| ||||||||| ||||||| || |||||||| |||||||||||||| | ||||||||| ||||||||| |||||||| |
|
|
| T |
39046734 |
aggtacttctagggcataatcatttaatattaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgat |
39046822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 1206524 - 1206334
Alignment:
| Q |
115 |
tatgatgagtttataaaagacatagatgatttcaagacctgcatgaagaatcatcatccaatcgtacttccagttcaagagttcaaa-aaagggtgaacg |
213 |
Q |
| |
|
|||||||| ||| | ||||||||| |||||||||||||||||||||| || |||| ||| || ||| ||||||||| |||||| |||||| ||| | |
|
|
| T |
1206524 |
tatgatgaatttgtgaaagacataaatgatttcaagacctgcatgaatgattatcaaatcatcatatttcaagttcaagaattcaaacaaagggcgaatg |
1206425 |
T |
|
| Q |
214 |
aggtacttaaagggcataaatatttaattttgggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaa |
311 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| ||||||||||||| || || |||||||| |||||||||| |||||| | |||||| |
|
|
| T |
1206424 |
aggtacttaaa-ggcataaacattta------ggattcaacgcctacatgaagcgttatcacatcagactgccaattccagcggatgatgaacaacaa |
1206334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University