View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20671_low_13 (Length: 392)

Name: NF20671_low_13
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20671_low_13
NF20671_low_13
[»] chr6 (5 HSPs)
chr6 (1-374)||(3046687-3047071)
chr6 (1-52)||(30627897-30627948)
chr6 (1-52)||(30895258-30895309)
chr6 (2-52)||(21162423-21162473)
chr6 (12-52)||(12450436-12450476)
[»] chr7 (13 HSPs)
chr7 (1-52)||(48838386-48838437)
chr7 (1-52)||(6838449-6838500)
chr7 (1-52)||(24163343-24163394)
chr7 (1-52)||(28677340-28677391)
chr7 (1-52)||(36245399-36245450)
chr7 (1-51)||(40176060-40176110)
chr7 (1-52)||(2523793-2523844)
chr7 (1-52)||(8566104-8566155)
chr7 (1-52)||(13807312-13807363)
chr7 (1-52)||(29365644-29365695)
chr7 (1-52)||(39153310-39153361)
chr7 (1-52)||(45533304-45533355)
chr7 (1-51)||(40142797-40142847)
[»] chr2 (8 HSPs)
chr2 (1-52)||(11030215-11030266)
chr2 (1-52)||(12962779-12962830)
chr2 (1-52)||(41153134-41153185)
chr2 (1-52)||(29988966-29989017)
chr2 (1-52)||(36881601-36881652)
chr2 (1-52)||(38554481-38554532)
chr2 (2-52)||(28014348-28014398)
chr2 (3-47)||(14952837-14952881)
[»] chr4 (10 HSPs)
chr4 (1-52)||(32714292-32714343)
chr4 (1-52)||(44111768-44111819)
chr4 (1-52)||(48361126-48361177)
chr4 (1-52)||(50121511-50121562)
chr4 (1-49)||(42169069-42169117)
chr4 (1-52)||(4386210-4386261)
chr4 (1-52)||(30191970-30192021)
chr4 (1-52)||(48195964-48196015)
chr4 (1-52)||(50685479-50685530)
chr4 (1-47)||(17284763-17284809)
[»] chr3 (5 HSPs)
chr3 (1-52)||(23222981-23223032)
chr3 (1-52)||(13622510-13622561)
chr3 (1-52)||(51517031-51517082)
chr3 (2-52)||(21662961-21663011)
chr3 (107-152)||(38868131-38868176)
[»] chr1 (7 HSPs)
chr1 (1-52)||(15286032-15286083)
chr1 (1-52)||(6661588-6661639)
chr1 (1-52)||(26760196-26760247)
chr1 (1-52)||(26924287-26924338)
chr1 (1-52)||(34332550-34332601)
chr1 (1-52)||(44939089-44939140)
chr1 (12-52)||(39748642-39748682)
[»] chr8 (5 HSPs)
chr8 (1-52)||(5031538-5031589)
chr8 (1-52)||(24618981-24619032)
chr8 (1-52)||(35149691-35149742)
chr8 (1-47)||(8803302-8803348)
chr8 (4-52)||(3236407-3236455)
[»] chr5 (5 HSPs)
chr5 (1-52)||(13664969-13665020)
chr5 (1-52)||(21488306-21488357)
chr5 (1-53)||(919664-919716)
chr5 (4-52)||(13789755-13789803)
chr5 (4-52)||(38394505-38394553)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 3046687 - 3047071
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttcccgtgaacactcgttaacattcccctttaataaattaagctttttcgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3046687 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttcctgtgaacactcgttaacattcccctttaataaattaagctttttcgg 3046786  T
Q  101 ttagaatgttaatttccatttgagtatgaaagttgatatctcttctttggcacggtaaggtactaaggttgctgtagaatgtgcctggttttggctgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3046787 ttagaatgttaatttccatttgagtatgaaagttgatatctcttctttggcacggtaaggtactaaggttgctgtagaatgtgcctggttttggctgtga 3046886  T
Q  201 tggagcattga-ttttttcgatatggtttagtgttttgttaggagttgtattgtataatagaggttatttgtggctgtttttctggttttgacaagcata 299  Q
    |||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3046887 tggaccgttgatttttttcgatatggtttagtgttttgttaggagttgtattgtataatagaggttatttgtggctgtttttctggttttgacaagcata 3046986  T
Q  300 a----------acttggtttggattagctttttggtctgctgttatttgcatctgattttacaaattgatttaatgttttgtttg 374  Q
    |          ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3046987 aacttggttttacttggtttggattagctttttggtgtgctgttatttgcatctgattttacaaattgatttaatgttttgtttg 3047071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30627897 - 30627948
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| | ||||||||||||||||    
T  30627897 atatagaccaaatacatcatttatgcaatgaatcagaaaagtcaaatgtttc 30627948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30895258 - 30895309
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||| |||||||| | ||||||| ||||||||||||||||||    
T  30895258 atatagaccaaatatatcatttatgcaatgaatcaaaaaagtcaaatgtttc 30895309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 21162473 - 21162423
Alignment:
Q  2 tatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||||| |||||| ||||| | |||||||||||||||| |||||||||    
T  21162473 tatagaccatatacattatttatgcaatgaattaaaaaagttaaatgtttc 21162423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 12450436 - 12450476
Alignment:
Q  12 atacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||||| | ||||||||||||||||||||| ||||    
T  12450436 atacatcatttatgcaatgaattaaaaaagtcaaatatttc 12450476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48838386 - 48838437
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  48838386 atatagaccaaatacatcatttatgtaatgaattaaaaaagttaaatgtttc 48838437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6838449 - 6838500
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  6838449 atatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 6838500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24163343 - 24163394
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | |||||||||||||||| |||||||||    
T  24163343 atatagaccatatacatcatttatgcaatgaattaaaaaagtgaaatgtttc 24163394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28677391 - 28677340
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  28677391 atatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 28677340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36245450 - 36245399
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  36245450 atatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 36245399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40176110 - 40176060
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgttt 51  Q
    |||||||||| |||||||||||||| ||||||| |||||||| ||||||||    
T  40176110 atatagaccaaatacatcatttaagcaatgaataaaaaaagtgaaatgttt 40176060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2523844 - 2523793
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||||||| |||| | ||||||| ||||||||||||||||||    
T  2523844 atatagaccagatacatcgtttatgcaatgaatcaaaaaagtcaaatgtttc 2523793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8566155 - 8566104
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  8566155 atatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttc 8566104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13807312 - 13807363
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| || ||| |||||||| ||||||||| ||||||||||||||||||    
T  13807312 atatagatcaaatatatcatttatgtaatgaatcaaaaaagtcaaatgtttc 13807363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29365695 - 29365644
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| || |||||||||||| | |||| |||||||||||||||||||||    
T  29365695 atatagatcaaatacatcatttatgcaatgtattaaaaaagtcaaatgtttc 29365644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39153361 - 39153310
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||| | |||||||||||| | ||||||| ||||||||||||||||||    
T  39153361 atatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 39153310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45533304 - 45533355
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||| |||||   ||||||||||||||||||||||||||    
T  45533304 atatagaccaaatacattatttatacaatgaattaaaaaagtcaaatgtttc 45533355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40142847 - 40142797
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgttt 51  Q
    |||||||||| |||||| ||||| | ||||||| |||||||||||||||||    
T  40142847 atatagaccaaatacattatttatgcaatgaatcaaaaaagtcaaatgttt 40142797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11030266 - 11030215
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||||    
T  11030266 atatagaccaaatacatcatttatgtaatgaatcaaaaaagtcaaatgtttc 11030215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12962779 - 12962830
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  12962779 atatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 12962830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41153185 - 41153134
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  41153185 atatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 41153134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29988966 - 29989017
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| || |||||||||||| | ||||||| ||||||||||||||||||    
T  29988966 atatagatcaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 29989017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36881601 - 36881652
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| || ||| ||||| ||||||||| ||||||||||||||||||    
T  36881601 atatagaccaaattcattatttatgtaatgaatcaaaaaagtcaaatgtttc 36881652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38554532 - 38554481
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||| ||||| ||||||||| |||| |||||||||||||    
T  38554532 atatagaccaaatacattatttatgtaatgaatcaaaatagtcaaatgtttc 38554481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 28014348 - 28014398
Alignment:
Q  2 tatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||||| |||||||||||| | ||||||| ||||| ||||||||||||    
T  28014348 tatagaccaaatacatcatttatgcaatgaataaaaaaggtcaaatgtttc 28014398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 14952837 - 14952881
Alignment:
Q  3 atagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 47  Q
    ||||| ||||||||||||||||  |||||| ||||||||||||||    
T  14952837 atagatcacatacatcatttaatgaatgaactaaaaaagtcaaat 14952881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32714343 - 32714292
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||| | |||||||||||| ||||||||| ||||||||||||||||||    
T  32714343 atatagactaaatacatcatttatgtaatgaatcaaaaaagtcaaatgtttc 32714292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44111819 - 44111768
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| ||||| ||| ||||||||||||||||||    
T  44111819 atatagaccaaatacatcatttatgtaattaatcaaaaaagtcaaatgtttc 44111768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48361126 - 48361177
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  48361126 atatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 48361177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 50121511 - 50121562
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||| |||||||| | ||||||||||||||||||||||||||    
T  50121511 atatagaccaaatatatcatttatgcaatgaattaaaaaagtcaaatgtttc 50121562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42169117 - 42169069
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgt 49  Q
    |||| ||||| |||||||||||| ||||||||| |||||||||||||||    
T  42169117 atatggaccaaatacatcatttatgtaatgaatcaaaaaagtcaaatgt 42169069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4386210 - 4386261
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||| | |||||||||||| ||||||||| ||||||||||||| ||||    
T  4386210 atatagactaaatacatcatttatgtaatgaatcaaaaaagtcaaatttttc 4386261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30191970 - 30192021
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  30191970 atatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttc 30192021  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48195964 - 48196015
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||  ||||||||||||||||||    
T  48195964 atatagaccaaatacatcatttatgcaatgaaccaaaaaagtcaaatgtttc 48196015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50685530 - 50685479
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||| ||| ||||||||||||||||||    
T  50685530 atatagaccaaatacatcatttatggaattaataaaaaaagtcaaatgtttc 50685479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17284809 - 17284763
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 47  Q
    ||||||||||||||||||||||| | ||||||| |||||| ||||||    
T  17284809 atatagaccacatacatcatttatgcaatgaatcaaaaaaatcaaat 17284763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23223032 - 23222981
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  23223032 atatagaccaaatacatcatttatataataaattaaaaaagtcaaatgtttc 23222981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13622561 - 13622510
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  13622561 atatagaccaaatatatcatttatgcaatgaactaaaaaagtcaaatgtttc 13622510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 51517031 - 51517082
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||  ||||||||||||||||||    
T  51517031 atatagaccaaatacatcatttatgcaatgaaccaaaaaagtcaaatgtttc 51517082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 21662961 - 21663011
Alignment:
Q  2 tatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  21662961 tatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttc 21663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 38868176 - 38868131
Alignment:
Q  107 tgttaatttccatttgagtatgaaagttgatatctcttctttggca 152  Q
    ||||||||||||||||||||||||| | ||||||| || |||||||    
T  38868176 tgttaatttccatttgagtatgaaaatggatatctattgtttggca 38868131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15286083 - 15286032
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| || ||||||||||||  |||||||||||||||||||||||||||    
T  15286083 atatagatcaaatacatcatttatataatgaattaaaaaagtcaaatgtttc 15286032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6661588 - 6661639
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||| ||| ||||||||||||||||||    
T  6661588 atatagaccaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttc 6661639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26760247 - 26760196
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  26760247 atatagaccaaatacatcatttattcaatgaatcaaaaaagtcaaatgtttc 26760196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26924287 - 26924338
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  26924287 atatagaccaaatacatcatttattcaatgaatcaaaaaagtcaaatgtttc 26924338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34332550 - 34332601
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  34332550 atatagaccaaatacatcatttatccaatgaatcaaaaaagtcaaatgtttc 34332601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44939140 - 44939089
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  44939140 atatagaccaaatacatcatttatacaatgaataaaaaaagtcaaatgtttc 44939089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 39748682 - 39748642
Alignment:
Q  12 atacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||||| | ||||||||||||||||||||| ||||    
T  39748682 atacatcatttatgcaatgaattaaaaaagtcaaatatttc 39748642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5031538 - 5031589
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||| | |||||||||||| | ||||||| ||||||||||||||||||    
T  5031538 atatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttc 5031589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24619032 - 24618981
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||||||| |||||||||||| |||||    
T  24619032 atatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaaggtttc 24618981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35149742 - 35149691
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||||||||| | ||| ||| ||||||||||||||||||    
T  35149742 atatagaccaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttc 35149691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8803302 - 8803348
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaat 47  Q
    |||||||||| |||||||||||| ||||||||| |||||||| ||||    
T  8803302 atatagaccaaatacatcatttatgtaatgaatcaaaaaagttaaat 8803348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 3236407 - 3236455
Alignment:
Q  4 tagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| ||||||||||||   ||||||||||||||||||||| ||||    
T  3236407 tagaccaaatacatcatttatacaatgaattaaaaaagtcaaatatttc 3236455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13665020 - 13664969
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| || |||||||||||| | ||| ||||||||||||||||||||||    
T  13665020 atatagatcaaatacatcatttatgcaattaattaaaaaagtcaaatgtttc 13664969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21488357 - 21488306
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    |||||||||| |||||| ||||| | ||||||||||||||||||||| ||||    
T  21488357 atatagaccaaatacattatttatgcaatgaattaaaaaagtcaaatatttc 21488306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 919716 - 919664
Alignment:
Q  1 atatagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttcc 53  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||| |||||    
T  919716 atatagaccaaatacatcatttattgaatgaatcaaaaaagtcaaatatttcc 919664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 13789803 - 13789755
Alignment:
Q  4 tagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  13789803 tagaccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttc 13789755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 38394505 - 38394553
Alignment:
Q  4 tagaccacatacatcatttaagtaatgaattaaaaaagtcaaatgtttc 52  Q
    ||||||| |||||||||||| | ||||||| |||||||| |||||||||    
T  38394505 tagaccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttc 38394553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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