View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_15 (Length: 379)
Name: NF20671_low_15
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 59 - 367
Target Start/End: Original strand, 43854161 - 43854466
Alignment:
| Q |
59 |
tttttgttaaaaaatgcacatatagagaacattgttctgttttaaagtttaaaccatttgactttagtccagaaattaatatataaaataaaagtacaat |
158 |
Q |
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| T |
43854161 |
tttttgttaaaaaatgcacatatagagaacattgttctgttttaaagtttaaaccatttgactttagtccagaaattaatatataaaataaaagtacaat |
43854260 |
T |
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| Q |
159 |
ggtaatatcatattttatcttcttaatttaatttttaactaaatttatggtggaaatttgtcctatgtagttactcaacaattgcatgggtggcttcatt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854261 |
ggtaatatcatattttatcttcttaatttaatttttaaataaatttatgg---aaatttgtcctatgtagttactcaacaattgcatgggtggcttcatt |
43854357 |
T |
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| Q |
259 |
gaaaaagggagttcaaccagatgtggcatatggctacaaagccacaactccaacaggaactgttttcaatttcttcagtgctttaggtgatgttgcattt |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854358 |
aaaaaagggagttcaaccagatgtggcatatggctacaaagccacaactccaacaggaactgttttcaatttcttcagtgctttaggtgatgttgcattt |
43854457 |
T |
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| Q |
359 |
gcctatgct |
367 |
Q |
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||||||||| |
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| T |
43854458 |
gcctatgct |
43854466 |
T |
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