View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_16 (Length: 372)
Name: NF20671_low_16
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 23861050 - 23860693
Alignment:
| Q |
1 |
tttactaataaatgatcagattgtgacctcttcattcaaagctgtttatgctgttaacgatgagaaagagcgcgagaagaatattgaagaatcatctgag |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| | ||| |
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| T |
23861050 |
tttacgaataaatgatcagattgtgacctcttcattcaaagctgtttatgctgttaacgatgagaaggagcgccagaagaatgttgaagaatcaaccgag |
23860951 |
T |
|
| Q |
101 |
gctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagattaactttgtggatattgctgctgtgttcatagctttctggatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23860950 |
gctctgcagattcttgagaatgagctgaagaacaagtactttgggggagaagagattaactttgtggatattgctgctgtgttcatagctttttggatcc |
23860851 |
T |
|
| Q |
201 |
ctttaattcaagacatagcagatttgaaattgttcggtgctgaaaagtatccaaagctttacaaatggagccaagaatttctgaaccatcctgctgtgaa |
300 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23860850 |
ctttgattcaagacatagctgaattgaaattgttcaatgctgaaaagtatccaaagctttacaaatggagccaagaatttctcaaccatcctgctgtgaa |
23860751 |
T |
|
| Q |
301 |
ggaacatgtgcctgctagagaccctctttttgcatttttcaaagctaaatatgatgcc |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23860750 |
ggaacatgtgcctgctagagaccctctttttgcatttttcaaagctaaatatgatgcc |
23860693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 23864586 - 23864242
Alignment:
| Q |
11 |
aatgatcagattgtgacctcttcattcaaagctgtttatgctgttaacgatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcaga |
110 |
Q |
| |
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||||||||||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
23864586 |
aatgatcagattgcgactcctacattgaaagctgtttatgcttttaacgatgagaaagagcgcgagaagaatattgaagaatcaactggagctctgcaga |
23864487 |
T |
|
| Q |
111 |
ttcttgagaatgagctgaagggcaagtactttgggggagaagagattaactttgtggatattgctgctgtgttcatagctttctggatccctttaattca |
210 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||| |
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|
| T |
23864486 |
ttctcgagaatgagctgaaggacaagttctttgggggagaggagattggttttgtggatatttctgctgtgttcatagctttttggatccctttgtttca |
23864387 |
T |
|
| Q |
211 |
agacatagcagatttgaaattgttcggtgctgaaaagtatccaaagctttacaaatggagccaagaatttctgaaccatcctgctgtgaaggaacatgtg |
310 |
Q |
| |
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|||| || || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |
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| T |
23864386 |
agacttaatagggttgaaatggttcactgctgaaaagtatccaaagctttacaaatggagccaagaatttctcaaccatccaattgtgaaggagaatgtg |
23864287 |
T |
|
| Q |
311 |
cctgctagagaccctctttttgcatttttcaaagctaaatatgat |
355 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |||| ||||||| |
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|
| T |
23864286 |
cctcttagagaccctctttttgcaaatttcaaggctagatatgat |
23864242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 304
Target Start/End: Complemental strand, 23840133 - 23839889
Alignment:
| Q |
59 |
gatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagatta |
158 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| || |||||||||| ||| ||||| |||||||||||||||| ||||||||||| ||||||||| ||| |
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|
| T |
23840133 |
gatgagaaagagcgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagttta |
23840034 |
T |
|
| Q |
159 |
actttgtggatattgctgctgtgttcatagctttctggatccctttaattcaagacatagcagatttgaaattgttcggtgctgaaaagtatccaaagct |
258 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||||| || ||||||||||| || ||| |||||||| |||||||||| ||||||||| |
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| T |
23840033 |
actttgtggatattgctgctgttttcgtagc-atctggatccctctagttcaagacataatagggttgcaattgttcacagctgaaaagtttccaaagct |
23839935 |
T |
|
| Q |
259 |
ttacaaatggagccaagaatttctgaaccatcctgctgtgaaggaa |
304 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||| |||||||||| |
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|
| T |
23839934 |
ttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaa |
23839889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 344
Target Start/End: Complemental strand, 23843858 - 23843573
Alignment:
| Q |
59 |
gatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagatta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | |||||||| || ||||||||||||||||||||| |||||||||||| ||||||||| ||| |
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|
| T |
23843858 |
gatgagaaagagcgcgagaagaatattgaagaagcaaccgaggctcttcactttcttgagaatgagctgaaggacaagtactttggaggagaagagttta |
23843759 |
T |
|
| Q |
159 |
actttgtggatattgctgctgtgttcatagctttctggatccctttaattcaagacatagcagatttgaaattgttcggtgctgaaaagtatccaaagct |
258 |
Q |
| |
|
||||||| |||||||||||||| ||| |||| || ||| ||||| || ||||||||||| | || || |||||||| |||||||||| |||||||| |
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|
| T |
23843758 |
actttgtcgatattgctgctgttttcgtagcattttgggtccctctagttcaagacataaccgagctgcaattgttcacagctgaaaagttcccaaagct |
23843659 |
T |
|
| Q |
259 |
ttacaaatggagccaagaatttctgaaccatcctgctgtgaaggaacatgtgcctgctagagaccctctttttgcatttttcaaag |
344 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||| |||||||||| | | ||| ||||||| |||||||| || ||||| |||| |
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|
| T |
23843658 |
ttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaaactcttcctcctagagagcctcttttcgccttttttaaag |
23843573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 38 - 346
Target Start/End: Complemental strand, 23856971 - 23856663
Alignment:
| Q |
38 |
aaagctgtttatgctgttaacgatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagt |
137 |
Q |
| |
|
||||||||| || | ||| | |||||||||||||||||||||||| |||||| | || ||||||||| |||||||||||||||||| |||||| ||||| |
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|
| T |
23856971 |
aaagctgttcataccgttcatgatgagaaagagcgcgagaagaatgttgaaggaacaattgaggctctacagattcttgagaatgagttgaaggacaagt |
23856872 |
T |
|
| Q |
138 |
actttgggggagaagagattaactttgtggatattgctgctgtgttcatagctttctggatccctttaattcaagacatagcagatttgaaattgttcgg |
237 |
Q |
| |
|
|||||| || || |||||| ||||||||||||| ||||||| ||||||||| ||||||||||| |||||||| ||| ||| ||| ||||||| |
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|
| T |
23856871 |
tctttggaggtgaggagattggaattgtggatattgcagctgtgtacatagctttttggatccctttgattcaagaaataacagggttgcaattgttgaa |
23856772 |
T |
|
| Q |
238 |
tgctgaaaagtatccaaagctttacaaatggagccaagaatttctgaaccatcctgctgtgaaggaacatgtgcctgctagagaccctctttttgcattt |
337 |
Q |
| |
|
||||||||||| ||| || |||| || ||||||||||||||||| |||||||| ||| |||||| || ||||| ||||||| ||||| ||||| | |
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|
| T |
23856771 |
tgctgaaaagtgtcccaaactttcgaagtggagccaagaatttctcaaccatccaattgttaaggaaaatatgcctcctagagaacctctctttgcctac |
23856672 |
T |
|
| Q |
338 |
ttcaaagct |
346 |
Q |
| |
|
||||||||| |
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|
| T |
23856671 |
ttcaaagct |
23856663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 23853248 - 23853367
Alignment:
| Q |
59 |
gatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagatta |
158 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || |||||||||||| ||||||||||||||||||||| ||||| |||||| ||||| ||||||| |
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|
| T |
23853248 |
gatgagaaagagcgcgagaaggctcgcgaagaattattcgaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaggagatta |
23853347 |
T |
|
| Q |
159 |
actttgtggatattgctgct |
178 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23853348 |
gctttgtggatattgctgct |
23853367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 23850857 - 23850976
Alignment:
| Q |
59 |
gatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagatta |
158 |
Q |
| |
|
||||||||||||||||||||| | |||||||| || |||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||| || |
|
|
| T |
23850857 |
gatgagaaagagcgcgagaaggctcgtgaagaattattcgaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaagaaatag |
23850956 |
T |
|
| Q |
159 |
actttgtggatattgctgct |
178 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23850957 |
gctttgtggatattgctgct |
23850976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 23855771 - 23855890
Alignment:
| Q |
59 |
gatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagatta |
158 |
Q |
| |
|
||||||||||| |||||||||| | | |||||| || |||||||||||| ||||||||||| ||||||| | ||||| |||||| |||||||||||| |
|
|
| T |
23855771 |
gatgagaaagaacgcgagaagagtcgtaaagaattattcgaggctctgcagtttcttgagaataagctgaatgacaagttctttggaggagaagagattg |
23855870 |
T |
|
| Q |
159 |
actttgtggatattgctgct |
178 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23855871 |
gttttgtggatattgctgct |
23855890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 23801148 - 23801015
Alignment:
| Q |
59 |
gatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagatta |
158 |
Q |
| |
|
||||||||||| || ||||||| |||||| ||| || |||||||| || |||||||||||||||| |||| ||| | |||||| || || || ||| |
|
|
| T |
23801148 |
gatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcattttcttgagaatgagctcaaggacaaattctttggtggggaggatattg |
23801049 |
T |
|
| Q |
159 |
actttgtggatattgctgctgtgttcatagcttt |
192 |
Q |
| |
|
||||| || |||||||||||| ||||| |||| |
|
|
| T |
23801048 |
gttttgttgacattgctgctgtggtcatatcttt |
23801015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 23805910 - 23805770
Alignment:
| Q |
59 |
gatgagaaagagcgcgagaagaatattgaagaatcatctgaggctctgcagattcttgagaatgagctgaagggcaagtactttgggggagaagagatta |
158 |
Q |
| |
|
||||||||||| || ||||||| |||||| ||| || |||||||| | |||||||||||||||| || | ||| | |||||| ||||| || ||| |
|
|
| T |
23805910 |
gatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcgatttcttgagaatgagctcaaagacaaattctttggtggagaggatattg |
23805811 |
T |
|
| Q |
159 |
actttgtggatattgctgctgtgttcatagctttctggatc |
199 |
Q |
| |
|
||||| || |||||||||||| ||||| |||| |||||| |
|
|
| T |
23805810 |
gttttgttgacattgctgctgtgatcatatctttttggatc |
23805770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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