View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20671_low_17 (Length: 345)
Name: NF20671_low_17
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 17142529 - 17142859
Alignment:
| Q |
1 |
tgattatcatacttggacccctttaggggtctatttataaccatcaaatttgattgtattatgctttgctatatcatatagatcatattaaacatggtgc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17142529 |
tgattatcatacatggacccctttaggggtctatttataaccatcaaatttgattgtattatgctttgctatatcatatagatcatattaaacatggtgc |
17142628 |
T |
|
| Q |
101 |
ataaaacatgtcattgacataagtatttttgtaatgccaattgggctacctcaagtggttaagaattagggagctagtactccccttctttaagggtggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17142629 |
ataaaacatgtcattgacataagtatttttgtaatgccaattgggctacctcaagtggttaagaattagggagctagtactcctcttctttaagggtggg |
17142728 |
T |
|
| Q |
201 |
gtattgatcccagaggtgtggacaacgatattgagatactgtttggatacgagcctataaggtttggattccacgcattaaataggtgacatgtggttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17142729 |
gtattgatcccagaggtgtggacaacgatattgagatactgtttggatacgagcctataaggtttggattccacgcattaaataggtgatatgtggttct |
17142828 |
T |
|
| Q |
301 |
cgtgagcttagctcagttggtagtgataatg |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
17142829 |
cgtgagcttagctcagttggtagtgacaatg |
17142859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 45105696 - 45105728
Alignment:
| Q |
299 |
ctcgtgagcttagctcagttggtagtgataatg |
331 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
45105696 |
ctcgtgagcttagctcagttggtagggataatg |
45105728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 20370194 - 20370162
Alignment:
| Q |
299 |
ctcgtgagcttagctcagttggtagtgataatg |
331 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
20370194 |
ctcgtgagcttagctcagttggtagggataatg |
20370162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 41763219 - 41763187
Alignment:
| Q |
299 |
ctcgtgagcttagctcagttggtagtgataatg |
331 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
41763219 |
ctcgtgagcttagctcagttggtagggataatg |
41763187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University