View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_18 (Length: 342)
Name: NF20671_low_18
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 1739280 - 1738952
Alignment:
| Q |
1 |
atttctcaagaaaataaaaacattttatgacacatgtaattgatttctcatttcnnnnnnncataagaaaatatctgtaagttagtagttttattactaa |
100 |
Q |
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| T |
1739280 |
atttctcaagaaaataaaaacattttatgacacatgtaattgatttctcatttctttttttcataagaaaatatctgtaagttagtagtgttattact-- |
1739183 |
T |
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| Q |
101 |
tttacatatctcttgtttgaaaacttagttcaccaaatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatata |
200 |
Q |
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| T |
1739182 |
-ttacatatctcttgtttgaaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatg----aattgaacttgtttacagatata |
1739088 |
T |
|
| Q |
201 |
gtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgt |
300 |
Q |
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| T |
1739087 |
ataatagaaaaagtttaggaggaatagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgt |
1738988 |
T |
|
| Q |
301 |
gaggaaatacatcccaaatacttatgtgatgatgtc |
336 |
Q |
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| T |
1738987 |
gaggaaatacatcccaaatacttatgtgatcatgtc |
1738952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 120 - 336
Target Start/End: Complemental strand, 1717667 - 1717455
Alignment:
| Q |
120 |
aaaacttagttcaccaaatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatatagtaatagaaaaagtttagg |
219 |
Q |
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| T |
1717667 |
aaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatg----aattgaacttgtttacagatacagtcatagaaaaagtttagg |
1717572 |
T |
|
| Q |
220 |
aggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgtgaggaaatacatcccaaat |
319 |
Q |
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| T |
1717571 |
aggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaat |
1717472 |
T |
|
| Q |
320 |
acttatgtgatgatgtc |
336 |
Q |
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||||||||||| ||||| |
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| T |
1717471 |
acttatgtgatcatgtc |
1717455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 336
Target Start/End: Complemental strand, 1754283 - 1754123
Alignment:
| Q |
176 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
275 |
Q |
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||||||||| |||| |||| ||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
1754283 |
tgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatctagatagcctcaagaaat |
1754184 |
T |
|
| Q |
276 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
336 |
Q |
| |
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||||||||| |||||||||| ||||||||||||| |||||| |||||||||| ||||| |
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| T |
1754183 |
attacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc |
1754123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 176 - 336
Target Start/End: Complemental strand, 1748967 - 1748807
Alignment:
| Q |
176 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
275 |
Q |
| |
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||||||||| |||| |||| ||| |||||| | |||||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||| | |
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| T |
1748967 |
tgaattgaatttgtggacaggtatggtaataaaccaagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagt |
1748868 |
T |
|
| Q |
276 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
336 |
Q |
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||||||||||||||||||||| |||||| ||||||| |||| | |||||||||| ||||| |
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| T |
1748867 |
attacaaggcagcttatgatgctgtgagaaaatacaacccagaggcttatgtgatcatgtc |
1748807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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