View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_20 (Length: 324)
Name: NF20671_low_20
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 58 - 297
Target Start/End: Complemental strand, 3652994 - 3652757
Alignment:
| Q |
58 |
tactgtttataaaattttggatgcttttcttctcattaaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgt |
157 |
Q |
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| T |
3652994 |
tactgtttataaaattttggatgcttttcttctcattaagaagttctgtcctatgcaagtggctctaattctaatcattttaaaatgctttattacacgt |
3652895 |
T |
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| Q |
158 |
tccaggggttaatagatcaagttatagggaaaggaagctccacttaatctgtttcaatctcttttctgcaaaaatgtgtgtataatcaagctatagagat |
257 |
Q |
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| T |
3652894 |
tccaggggttaatggatcaagttatagggaaagcaagctccacttaatctgtttcaatctcttttctgcaaaaat--gtgtataatcaagttatagagat |
3652797 |
T |
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| Q |
258 |
gacaaacaaattgtgcaccatgataactactctgtggtta |
297 |
Q |
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| T |
3652796 |
gacaaacaaattgtgcaccatgataattagtctgttgtta |
3652757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 3659218 - 3658917
Alignment:
| Q |
1 |
agaatatacttgcatgattcagaagcaatttaaaattgacaacatgaaaacttggcatactgtttataaaattttggatgcttttcttctcattaaggag |
100 |
Q |
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| T |
3659218 |
agaatatacttgcatgattcagaagcaattcaaaattgacaacat---aacttggcatactgtttatgaaattttggatgctttttttctcat-aaggag |
3659123 |
T |
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| Q |
101 |
ttctgtcctatgcaaatggctctaattctaatcattt-taaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaagctcca |
199 |
Q |
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| T |
3659122 |
ttttgtccaatgaaaaaggctgtaattctagtcatttgtaaaatgcttcattgtacgttctaaggtttaacagatcaagttatagggaaatcaagctcca |
3659023 |
T |
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| Q |
200 |
cttaatctgtttcaatctcttttctgcaaaaatgtgtgtataatcaagctatagagatgacaaacaaattgtgcaccatgataactactctgtggttact |
299 |
Q |
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| T |
3659022 |
cttaatctgtttcaatctcttatgtgcaaacatgtgtgtatggtcaagttatagagatgacaaaaaaattgtgcaccatgataactagtctgttgttact |
3658923 |
T |
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| Q |
300 |
agttag |
305 |
Q |
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|||||| |
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| T |
3658922 |
agttag |
3658917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 3706454 - 3706667
Alignment:
| Q |
94 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
193 |
Q |
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| T |
3706454 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3706553 |
T |
|
| Q |
194 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtgtataatcaag--ctatagagatgacaaacaaattgtgcaccatgataactactctg |
291 |
Q |
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| T |
3706554 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtatatgatcaagttgtagagagatgacaaacaaattgtgcaccatgataactagtctg |
3706653 |
T |
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| Q |
292 |
tggttactagttag |
305 |
Q |
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| T |
3706654 |
ttgttgcttgttag |
3706667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 3651083 - 3650870
Alignment:
| Q |
94 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
193 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||| || |
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| T |
3651083 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3650984 |
T |
|
| Q |
194 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtgtataatcaa--gctatagagatgacaaacaaattgtgcaccatgataactactctg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
3650983 |
gctccacttaatctgtttcaatctcttttctgcaaaaatgtgtatatgatcaaattgtagagagatgacaaacaaattgtgcaccatgataactagtctg |
3650884 |
T |
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| Q |
292 |
tggttactagttag |
305 |
Q |
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| T |
3650883 |
ttgttgcttgttag |
3650870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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