View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_21 (Length: 322)
Name: NF20671_low_21
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 7761178 - 7760864
Alignment:
| Q |
8 |
agattattctcacttgtggctacatttgttgtataagctcctaacctttaacccctaactggtttctgaagaacagcagacaacacaacttcagattttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761178 |
agattattctcacttgtggctacatttgttgtataagctcctaacctttaacccctaactggtttctgaagaacagcagacaacacaacttcagattttc |
7761079 |
T |
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| Q |
108 |
ctgatccaaaactatcaactttctctcccacaacccatttcaatttcttatatccaaatctttcaatcaaccttgttagagtttgtttcttctcttcact |
207 |
Q |
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| T |
7761078 |
ctgatccaaaactatcaactttctctcccacaacccatttcaatttcttatatccaaatctttcaatcaaccttgttagagtttgtttcttctcttcact |
7760979 |
T |
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| Q |
208 |
aaaacaaaagaaattatcaagccaaaacaaaccaccggcccgcaaaactcgatcgatatcaaacattaaaaactccaatttttcagccttccctccaaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7760978 |
aaaacaaaagaaattatcaagccaaaacaaaccaccggcccgcaaaactcgatcgatatcaaacattaaaaactccaatttttcagccttccctccaaca |
7760879 |
T |
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| Q |
308 |
tccaatgcacttgaa |
322 |
Q |
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| T |
7760878 |
tccaatgcacttgaa |
7760864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 28960565 - 28960287
Alignment:
| Q |
8 |
agattattctcacttgtggctacatttgttgtataagctcctaacctttaacccctaactggtttctgaagaacagcagacaacacaacttcagattttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28960565 |
agattattctcacttgtggctacatttgttgtataagctcctaacctttaacccttaactggtttctgaataacagcagacaacacaacttcagattttc |
28960466 |
T |
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| Q |
108 |
ctgatccaaaactatcaactttctctcccacaacccatttcaatttcttatatccaaatctttcaatcaaccttgttagagtttgtttcttctcttcact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28960465 |
ctgatccaaaactatcaactttctctcccacaacccatttcaatttcttatatccaaatctttcaatcaaccttgttagagtttgtttcttctcttcact |
28960366 |
T |
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| Q |
208 |
aaaacaaaagaaattatcaagccaaaacaaaccaccggcccgcaaaactcgatcgatatcaaacattaaaaactccaat |
286 |
Q |
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| T |
28960365 |
aaaacaaaagaaattatcaagccaaaacaaaccaccggcccgcaaaactcgatcgatatcaaacattaaaaactccaat |
28960287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 285
Target Start/End: Complemental strand, 52954200 - 52954033
Alignment:
| Q |
118 |
actatcaactttctctcccacaacccatttcaatttcttatatccaaatctttcaatcaaccttgttagagtttgtttcttctcttcactaaaacaaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | | ||||||||||||| || |||| || |
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| T |
52954200 |
actatcaactttctctcccacaacccatttcaattttctatatccaaacctttcaatcaaccttgtcaatgcaattttcttctcttcattagcacaatag |
52954101 |
T |
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| Q |
218 |
aaattatcaagccaaaacaaaccaccggcccgcaaaactcgatcgatatcaaacattaaaaactccaa |
285 |
Q |
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|| ||||||| ||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||| |
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| T |
52954100 |
aagttatcaatccaaaacaaaccaccagcccgcaaaattcgatcagcatcgaacattaaaaactccaa |
52954033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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