View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_22 (Length: 313)
Name: NF20671_low_22
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 3659262 - 3659576
Alignment:
| Q |
1 |
ctcttgtggtttcattttgttgtgtcacgcgaggagcccgagggatcacccacattagacaagagcagccacacaaatgagatagacacca----caatt |
96 |
Q |
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| T |
3659262 |
ctcttgtggtttcactatgttgtgtcatgagaggatcccgagggaccacccgcattagacaagagcaaccacacaaatgagatagacaccaaccacactt |
3659361 |
T |
|
| Q |
97 |
atctaaatgccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagt |
196 |
Q |
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| T |
3659362 |
atctaaattccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaatctaagt |
3659460 |
T |
|
| Q |
197 |
ccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttc |
296 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3659461 |
ccaatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaaaattttc |
3659560 |
T |
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| Q |
297 |
acgcctttactcttca |
312 |
Q |
| |
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|||||||||||||||| |
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| T |
3659561 |
acgcctttactcttca |
3659576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 107 - 312
Target Start/End: Original strand, 3653106 - 3653310
Alignment:
| Q |
107 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
205 |
Q |
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||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
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| Q |
206 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
305 |
Q |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
|
| Q |
306 |
ctcttca |
312 |
Q |
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||||||| |
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| T |
3653304 |
ctcttca |
3653310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 3657199 - 3657245
Alignment:
| Q |
194 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaa |
240 |
Q |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaa |
3657245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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