View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_25 (Length: 290)
Name: NF20671_low_25
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 42073684 - 42073405
Alignment:
| Q |
1 |
tcaactcttcacagtaaccttcctaatactctagcttttgtttcagctcaccaaatgaagatctcatctcagaaacttcaattatagcagaatctctact |
100 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42073684 |
tcaactcttcacagtaaccttccaaatactcaagcttttgtttcagctcaccaaatgaagatctcatctcagaaacttcaattatagcagaatctctact |
42073585 |
T |
|
| Q |
101 |
ctcatgagcttccataagctctctttttagcatctcaattgacataattcccatgtctttattaagaatctgagaaacttcctcagattctgttctattt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42073584 |
ctcatgagcttccataagctctcttttaagcatctcaattgacataattcccatgtctttattaagaatctgagaaacttcctcagattctgttctattt |
42073485 |
T |
|
| Q |
201 |
ggtgaaaaattctcattcttattcttgtgcttcttcttaaacttaggaaaaagccatgaaatcatccctttacttctgtg |
280 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42073484 |
ggtgaaaaaatctcattcttattcttgtgcttcttcttaaacttaggaaaaagccatgaaatcatccctttacttttgtg |
42073405 |
T |
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