View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_27 (Length: 284)
Name: NF20671_low_27
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 25702411 - 25702669
Alignment:
| Q |
17 |
aacacctacatatatacaaacacaatcatggacacacgttaacacatcgatatcaataaaaatatgagaaaataaattaagggaacggaatcacattttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702411 |
aacacctacatatatacaaacacaatcatggacacacgttaacaaatcgatatcaataaaaatatgagaaaataaattaagggaacggaatcacattttt |
25702510 |
T |
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| Q |
117 |
catgtccggacaagctttctatcagaaccgtgtcagtattacatagtttgtaatactttatggaattggattctggtctagacagttaaagacaaacnnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702511 |
catgtccggacaagctttctatcagaaccgtgtcagtattacatagtttgtaatactttatggaattggattctggtctagacagttaaagacaaacaaa |
25702610 |
T |
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| Q |
217 |
nnnnctaacatcattttttgctgaaatgataatactaataagagaggattcagaataat |
275 |
Q |
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| T |
25702611 |
aaaaattacatcattttttgctgaaatgagaatactaataagagaggattcagaataat |
25702669 |
T |
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