View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20671_low_28 (Length: 267)
Name: NF20671_low_28
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_28 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 67 - 267
Target Start/End: Original strand, 37756876 - 37757076
Alignment:
| Q |
67 |
gaccctcacccaacccatataattccaaaaatccaaaacatgacaatccactccatgccaaattaataacaaggaaaagttaagtgcgtgtttactttac |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37756876 |
gaccctcacccaacccatataattccaaaaatccaaaacatgacaatccactccatgccaaattaataacaaggaaaagttaagtgcctgtttactttac |
37756975 |
T |
|
| Q |
167 |
tgttttcattttcatttcaactaataagagttaaatgactatcactatgttctgacagtgtaaaataattttacaccgtcatcgaatagaaattcatcat |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37756976 |
tgttttcattttcatttcaactagtaagagttaaatgactatcactatgtactgacagtgtaaaataattttacaccgtcatcgaatagaaattcatcat |
37757075 |
T |
|
| Q |
267 |
c |
267 |
Q |
| |
|
| |
|
|
| T |
37757076 |
c |
37757076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 47549953 - 47549905
Alignment:
| Q |
219 |
tgacagtgtaaaataattttacaccgtcatcgaatagaaattcatcatc |
267 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
47549953 |
tgacaatgtaaaataattttacaccgttttcgaatagaaactcaccatc |
47549905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University