View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_29 (Length: 260)
Name: NF20671_low_29
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 42073869 - 42073634
Alignment:
| Q |
19 |
aagggtcttgcaaaattgtttcactgataatcttgattctgagactatctgcaaaaacccttctaccattacatcttcattcacaggcatcatcaaattt |
118 |
Q |
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| T |
42073869 |
aagggtcttgcaaaattgtttcactgataatcttgattctgagactatctgcaaaaacccttctaccattacatcttcattcacaggcatcatcaaattt |
42073770 |
T |
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| Q |
119 |
tctccatttccatcaaatggtattccaagtttctcatcacaaagtggagattcttttgcttgcattgcttgtttcaacgctttcttcaactcttcacagt |
218 |
Q |
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| T |
42073769 |
tctccatttccatcaaatggtattccaagtttctcatcacaaagtggagattcttttgcttgcattgcttgtttcaacgctttcttcaactcttcacagt |
42073670 |
T |
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| Q |
219 |
aaccttccaaatactctagcttttgtttcatctcac |
254 |
Q |
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| T |
42073669 |
aaccttccaaatactcaagcttttgtttcagctcac |
42073634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 24876834 - 24876764
Alignment:
| Q |
38 |
ttcactgataatcttgattctgagactatctgcaaaaacccttctaccattacatcttcattcacaggcat |
108 |
Q |
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| T |
24876834 |
ttcactgataatcttgactccgatactatctgcaagaatccctctatcattacttcctcgttcacaggcat |
24876764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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