View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20671_low_30 (Length: 257)

Name: NF20671_low_30
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20671_low_30
NF20671_low_30
[»] chr6 (2 HSPs)
chr6 (29-102)||(33768286-33768360)
chr6 (207-255)||(30701033-30701081)
[»] chr3 (1 HSPs)
chr3 (29-103)||(35517657-35517732)
[»] chr8 (1 HSPs)
chr8 (31-102)||(12472853-12472925)


Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 33768286 - 33768360
Alignment:
Q  29 cgcaagtatactttggatttgctctttgacaatgaccatgttgct-tgaagccttgttctactccctatgactct 102  Q
    ||||| ||||||||||||||||||| | ||| || |||| ||||| |||||||||||||||||||||||||||||    
T  33768286 cgcaaatatactttggatttgctctcttacagtggccatcttgctgtgaagccttgttctactccctatgactct 33768360  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 30701081 - 30701033
Alignment:
Q  207 ttttcaggcagctactcgtgtcttgaagtatttgaagagcttctcaaca 255  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||||    
T  30701081 ttttcagaaagctactcatgtcttgaagtatttgaagagcttctcaaca 30701033  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 35517732 - 35517657
Alignment:
Q  29 cgcaagtatactttggatttgctctttgacaatgaccatgttgct-tgaagccttgttctactccctatgactctc 103  Q
    |||||||||||||||||||| |||| |||||  | |||| ||| | ||||||||| ||||||||||||||||||||    
T  35517732 cgcaagtatactttggattttctctctgacatcggccatcttgttgtgaagccttattctactccctatgactctc 35517657  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 12472925 - 12472853
Alignment:
Q  31 caagtatactttggatttgctctttgacaatgaccatgttgct-tgaagccttgttctactccctatgactct 102  Q
    |||||||||||||||||| |||| |||||  | |||| ||||  |||| ||||||||||||||| ||||||||    
T  12472925 caagtatactttggattttctctctgacagaggccatcttgccgtgaacccttgttctactccccatgactct 12472853  T

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