View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20671_low_36 (Length: 236)
Name: NF20671_low_36
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 3438443 - 3438242
Alignment:
| Q |
17 |
acaagcacaaacacatacaccggatacaactaacacatagacacatgtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438443 |
acaagcacaaacacatacaccggatacaactaacacatagacacatgtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatat |
3438344 |
T |
|
| Q |
117 |
gaagtgtcggtgctacataacacatgattaagcacatataactaaagtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438343 |
gaagtgtcggtgctacataacacatgattaatcacatataactaaagtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcc |
3438244 |
T |
|
| Q |
217 |
tc |
218 |
Q |
| |
|
|| |
|
|
| T |
3438243 |
tc |
3438242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University