View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20671_low_4 (Length: 569)
Name: NF20671_low_4
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 551
Target Start/End: Original strand, 705213 - 705740
Alignment:
| Q |
15 |
taacatacatgtatctcataatttgacgtataggtgcgtcaagttaaccgtggagggt-ctgaagcagttgttgcataaatgtctatccattcagaatta |
113 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| |
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| T |
705213 |
taacatacatatatctcataatttgacgcataggtgtgtcaagttaaccaaccagggttctgaagcagttgttgcacaaatgtctatcacttcagaatta |
705312 |
T |
|
| Q |
114 |
gagtctctatgcagtgtctaggtaggcactgaaactcaacatattgaagtttaaattttcttgccttaagattccattaactaactaatcatag--catt |
211 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| ||||| ||||| ||| |||||| |||| |
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| T |
705313 |
gaatctctatgcagtgt------aggcactgaaactcaacatattgaagttcaagttttcttgccttcagatttgattaattaa----tcatagaacatt |
705402 |
T |
|
| Q |
212 |
actcttattcaatttcacagatgaagcttgtaggaaaatatgccttctgacacatctaacattttaggatctttgcggcgcttaggtaaaatcttcggtt |
311 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |
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| T |
705403 |
actcttattcagtttcacagttgaagcttataggaaaatatgccttttgacacatctaacgttttaggatctctgcggcgctcaggtaaaatcttcggtt |
705502 |
T |
|
| Q |
312 |
tctgaagattt---cgcacaacagtatctattgcagacaccgctaatagaaataagtttggtttgcagaatctttcagattgaggac---agtaaatttc |
405 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
705503 |
tctgaagatttatctgcacaacactatctattgcagacaccgctaatagaaataagtttggtttgcagaatc--tcagattgaggacttaagtaaatttc |
705600 |
T |
|
| Q |
406 |
aaaattcaagaaccttttatccctcaatctgactttgtaaattgatgatcgactcgaatatccatctgtcacattttatgatagtaacagagttgtatct |
505 |
Q |
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| T |
705601 |
aaaattcaagaaccttttatccctcaatct---tttgtaaattgatgatcaactcaaatatcca--tgtcacattttatgatagtaacggagttgtatct |
705695 |
T |
|
| Q |
506 |
aattttacgcaatagatgtgtacgtgtgactgatgagtgggttaaa |
551 |
Q |
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|| |||| ||||||| ||||||||||||||||||||| |||||||| |
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| T |
705696 |
aa-tttatgcaataggtgtgtacgtgtgactgatgagggggttaaa |
705740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 704824 - 704747
Alignment:
| Q |
295 |
aggtaaaatcttcggtttctgaagatttc---gcacaacagtatctattgcagacaccgctaatagaaataagtttgg |
369 |
Q |
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||||||||||||||||||||||||||||| |||||||| | |||| ||||||||| |||||||||||||||||||| |
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| T |
704824 |
aggtaaaatcttcggtttctgaagatttctctgcacaacactgtctactgcagacactgctaatagaaataagtttgg |
704747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 23685608 - 23685384
Alignment:
| Q |
29 |
ctcataatttgacgtataggtgcgtcaagttaaccgtggagggtctgaagcagttgttgcataaatgtctatccattcagaattagagtctctatgcagt |
128 |
Q |
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|||||||||||||| ||||||| |||||||||| | | ||||||||||||||||||||||| |||||||||||| ||| |||| ||| |||||||| ||| |
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| T |
23685608 |
ctcataatttgacgcataggtgtgtcaagttaatcattgagggtctgaagcagttgttgcacaaatgtctatcccttccgaatcagaatctctatgtagt |
23685509 |
T |
|
| Q |
129 |
gtctaggtaggcactgaaactcaacatattgaagtttaaattttcttgccttaagattccattaactaactaatcatagcattactcttattcaatttca |
228 |
Q |
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|||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||| ||||| ||| | || ||||||||||||||||||| ||||| |
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| T |
23685508 |
gtctaggtaggcactgcaactcaacatattgaagttcaagttttcttgctttaagatttgattaattaa-tcat-atagcattactcttattcagtttca |
23685411 |
T |
|
| Q |
229 |
cagatgaagcttgtaggaaaatatgcc |
255 |
Q |
| |
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|| ||||||||| |||||||||||||| |
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| T |
23685410 |
caaatgaagcttataggaaaatatgcc |
23685384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 356 - 472
Target Start/End: Complemental strand, 23685380 - 23685260
Alignment:
| Q |
356 |
agaaataagtttggtttgcagaatctttcagattgaggac---agtaaatttcaaaattcaagaaccttttatccctcaatctgactttgt-aaattgat |
451 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || || |||||||| |
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| T |
23685380 |
agaaataagtcaggtttgcagaatctttcagattgaggacttaagtatatttcaaaattcaagaaccttgtatccctcaatctgaattggtaaaattgat |
23685281 |
T |
|
| Q |
452 |
gatcgactcgaatatccatct |
472 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
23685280 |
gatcaactcgaatatccatct |
23685260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 352 - 549
Target Start/End: Complemental strand, 23746018 - 23745815
Alignment:
| Q |
352 |
taatagaaataagtttggtttgcagaatctttcagattgaggac---agtaaatttcaaaattcaagaaccttttatccctcaatctgactttgtaaatt |
448 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| ||||| || |||||||||| |||||||||| | |||||||||||||||| ||||||| |
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| T |
23746018 |
taatagaactaagtttggcttgcagaatctttcagatcaaggacttcagagtatttcaaaatgcaagaaccttgtttccctcaatctgacttggtaaatt |
23745919 |
T |
|
| Q |
449 |
gatgatcgactcgaatatccatctgtcacattttatgat---agtaacagagttgtatctaattttacgcaatagatgtgtacgtgtgactgatgagtgg |
545 |
Q |
| |
|
||||||| ||| |||||| | | || ||||||||||| | ||| ||| |||||||||||||||| |||| ||||||||||||||||||||| || |
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| T |
23745918 |
gatgatcaacttcaatatctgtgtatctcattttatgatgaaaataatcgagctgtatctaattttacgttataggtgtgtacgtgtgactgatgagggg |
23745819 |
T |
|
| Q |
546 |
gtta |
549 |
Q |
| |
|
|||| |
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|
| T |
23745818 |
gtta |
23745815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 45 - 322
Target Start/End: Complemental strand, 23746510 - 23746241
Alignment:
| Q |
45 |
taggtgcgtcaagttaaccgtggagggtctgaagcagttgttgcataaatgtctatccattcagaattagagtctctatgcagtgtctaggtaggcactg |
144 |
Q |
| |
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|||||||||||||||||| | | ||| ||||| |||||||||| ||||| |||||| |||||| || || ||||||||||||||||||||||| ||| |
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| T |
23746510 |
taggtgcgtcaagttaactgatgcggggttgaaggagttgttgcagaaatgcctatcccttcagagtttgaatctctatgcagtgtctaggtaggaacta |
23746411 |
T |
|
| Q |
145 |
aaactcaacatattgaagtttaaattttcttgccttaagattccattaactaactaatcatagcattactcttattcaatttcacagatgaagcttgtag |
244 |
Q |
| |
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||||||| |||||| | ||| | || || |||| | |||| ||||| | || |||||||||| | |||| ||||||||||||||||| ||| |
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| T |
23746410 |
aaactcatcatatttatgttccagttgtcatgccctgggattggattaattcac-------agcattactcatgttcagtttcacagatgaagcttatag |
23746318 |
T |
|
| Q |
245 |
gaaaatatgccttctgacacatctaacattttaggatctttgcggcgcttaggtaaaatcttcggtttctgaagattt |
322 |
Q |
| |
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|||||||||||||||||||| ||| || |||| |||||| || || || ||||||||||||| ||||||||| |||| |
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|
| T |
23746317 |
gaaaatatgccttctgacacgtctcacgtttttggatctctgtggtgcccaggtaaaatcttc-gtttctgaatattt |
23746241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 536
Target Start/End: Original strand, 23702710 - 23702804
Alignment:
| Q |
442 |
gtaaattgatgatcgactcgaatatccatctgtcacattttatgatagtaacagagttgtatctaattttacgcaatagatgtgtacgtgtgact |
536 |
Q |
| |
|
|||||| ||||||| ||| |||||||| ||| || ||||||||| ||||||| |||||| ||||||||||||| ||| ||||| ||||||||| |
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|
| T |
23702710 |
gtaaatcgatgatcaacttgaatatccgtctatctcattttatgttagtaacggagttgcatctaattttacgtgataattgtgttcgtgtgact |
23702804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 19565581 - 19565617
Alignment:
| Q |
352 |
taatagaaataagtttggtttgcagaatctttcagat |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
19565581 |
taatagaaataagtttggtttgcagaatctttcagat |
19565617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 23685248 - 23685212
Alignment:
| Q |
204 |
atagcattactcttattcaatttcacagatgaagctt |
240 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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|
| T |
23685248 |
atagcattactcttattcagtttcacagatgaagctt |
23685212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 23702560 - 23702590
Alignment:
| Q |
208 |
cattactcttattcaatttcacagatgaagc |
238 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
23702560 |
cattactcttattcaatttcacagatgaagc |
23702590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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