View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20671_low_7 (Length: 469)
Name: NF20671_low_7
Description: NF20671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20671_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 2328717 - 2329153
Alignment:
| Q |
18 |
gtttctaacccgcgctctcaaccttgcgcgttttctggatgtagtttacaaagctgacgatacctccacacgttctgaaggcctaatgaagtcatatatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
2328717 |
gtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatc |
2328816 |
T |
|
| Q |
118 |
aaagctgttcttgttgatccagttccaatttgatcgttactttttatgttttgtgcgttatgtttcaagtttgtattagaaaaatgcatgtgtgctttat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2328817 |
aaagctgttcttgttgatccagttccaatttgatcattaatttttatgttttgtgctttatgtttcaagtttgaattagaaaaatgcatgtgtgctttat |
2328916 |
T |
|
| Q |
218 |
gtgctgcttggttcacaatatttgaacaatttatgctattttgatgtaatacctaggcttaattatgcactttggtcaagtctgttgcaaacagaaagat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328917 |
gtgctgcttggttcacaatatttgaacaatttatgctattttgatgtaatatctaggcttaattatgcactttggtcaagtctgttgcaaacagaaagat |
2329016 |
T |
|
| Q |
318 |
atcttattttgatgtaatatacgaacaagttatgtgtaatttgaaacagttatgcactatctagggccagttatgctatttcaaattcttgttaattaga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2329017 |
atcttattttgatgtaatatacgaacaagttatgtgtaatttgaaacagttatgcactatctagggcaagttatgctatttcaaattcttgttaattaga |
2329116 |
T |
|
| Q |
418 |
taacttatttgctacctaaattgtgtaccaatcatgt |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329117 |
taacttatttgctacctaaattgtgtaccaatcatgt |
2329153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University