View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20672_low_2 (Length: 380)
Name: NF20672_low_2
Description: NF20672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20672_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 40695989 - 40696345
Alignment:
| Q |
11 |
gatgaaggaagaggaggagtaggaggtggagctgaaggttgatacttgcctttaatcatgtaaacaattcaatgacatcaatcacataacccta----at |
106 |
Q |
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| T |
40695989 |
gatggaggaagaggaggagtaggaggtggagctgaaggttgatacttgcctttaatcatgtaaacaattcaatgacatcaatcacataaccctagtacgt |
40696088 |
T |
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| Q |
107 |
agcatcaataagataaatttttcacatgaagtatataataagtaactaaccacataaaagtagattctgtggaggaggtttctctttggcagggttagga |
206 |
Q |
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| T |
40696089 |
agcatcaataagataaatttttcacatgaagtatataataagtaactaaccacataaaagtagattctgtggaggaggtttctctttggcagggttagga |
40696188 |
T |
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| Q |
207 |
ttaggatcaaaaactctcacataaagctcttcacctaaataccaacttttcaaattctgtgatctcaagttccacattcctggattgtcaggatacacat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40696189 |
ttaggatcaaaaactctcacataaagctcttcacctaaataccaacttttcaaattctgtgatctcaagttccacattcctggattgtcaggatacacat |
40696288 |
T |
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| Q |
307 |
aaactgcactccatcctccagggaacacttgcacagttgagcgaacgacggggtcaa |
363 |
Q |
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| T |
40696289 |
aaactgcactccatcctccagggaacacttgcacagttgagcgaacgacggggtcaa |
40696345 |
T |
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