View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20672_low_3 (Length: 358)

Name: NF20672_low_3
Description: NF20672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20672_low_3
NF20672_low_3
[»] chr4 (16 HSPs)
chr4 (20-352)||(7615086-7615418)
chr4 (20-350)||(7636900-7637233)
chr4 (34-352)||(7606086-7606404)
chr4 (36-233)||(7656207-7656404)
chr4 (20-165)||(7628524-7628669)
chr4 (271-352)||(7628708-7628789)
chr4 (40-224)||(39097544-39097734)
chr4 (281-350)||(7633487-7633556)
chr4 (172-224)||(39088005-39088057)
chr4 (157-227)||(39070932-39071002)
chr4 (170-224)||(39091394-39091448)
chr4 (52-137)||(39091270-39091355)
chr4 (175-214)||(39082354-39082393)
chr4 (52-117)||(39075095-39075160)
chr4 (64-116)||(39070833-39070885)
chr4 (52-113)||(39087879-39087940)
[»] chr7 (5 HSPs)
chr7 (20-352)||(8936052-8936375)
chr7 (20-350)||(8913546-8913872)
chr7 (34-294)||(8941746-8942005)
chr7 (293-352)||(8938828-8938887)
chr7 (281-350)||(8919071-8919140)
[»] chr3 (2 HSPs)
chr3 (32-235)||(40147433-40147636)
chr3 (52-228)||(8102323-8102499)
[»] chr6 (1 HSPs)
chr6 (20-225)||(6500335-6500540)
[»] scaffold0190 (1 HSPs)
scaffold0190 (157-223)||(4435-4501)
[»] chr8 (2 HSPs)
chr8 (170-224)||(15745020-15745074)
chr8 (54-116)||(34173991-34174053)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 7615086 - 7615418
Alignment:
Q  20 attagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 119  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615086 attagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 7615185  T
Q  120 tccagcaaaaaccgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatgga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7615186 tccagcaaaaaccgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacgga 7615285  T
Q  220 gaactgctaatggctatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7615286 gaactgctaatggctatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagactcgtagtgattcttcaacttctcat 7615385  T
Q  320 cagtgtgtgaaacaattaacttgttcatctcac 352  Q
    |||||||||||||||||||||||||||||||||    
T  7615386 cagtgtgtgaaacaattaacttgttcatctcac 7615418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 7636900 - 7637233
Alignment:
Q  20 attagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 119  Q
    ||||||||||  ||||||||||||| |  ||||||||||||||| |||||||||||||| | | ||||||||||||||| ||||||||||||||||||||    
T  7636900 attagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctat 7636999  T
Q  120 tccagcaaaaaccgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatgga 219  Q
    ||| ||||| ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  7637000 tccggcaaataccgtaataagtccatttattttatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatcaaaccatgga 7637099  T
Q  220 gaactgctaatggctatgaaattattttttgccatg---ttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttct 316  Q
    ||||| ||||||| |||||||||||||||| |||||   |||| |  ||||  ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  7637100 gaactactaatggatatgaaattattttttaccatgttcttagcaagcctaaaaaagcttggatttcttaaccaagactcgtaatgattcttcaacttct 7637199  T
Q  317 catcagtgtgtgaaacaattaacttgttcatctc 350  Q
    |||||||||||||| |||||||||||||||||||    
T  7637200 catcagtgtgtgaagcaattaacttgttcatctc 7637233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 34 - 352
Target Start/End: Original strand, 7606086 - 7606404
Alignment:
Q  34 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 133  Q
    ||||||||||| || |||||| |||||||||||||||||| ||  |  | |||||| |||||||| || |||||||||||||||||||||||||| ||      
T  7606086 acatccatgaaatgtgggtcacttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacat 7606185  T
Q  134 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 233  Q
    | | || |||||||  ||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||     
T  7606186 ttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatgga 7606285  T
Q  234 tatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaaca 333  Q
    |||||||||||| || | |||| ||| |  |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||    
T  7606286 tatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagca 7606385  T
Q  334 attaacttgttcatctcac 352  Q
    ||||| |||||||||||||    
T  7606386 attaatttgttcatctcac 7606404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 233
Target Start/End: Complemental strand, 7656404 - 7656207
Alignment:
Q  36 atccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgta 135  Q
    ||||||||| | ||| |||||||||||||||||||||||||  |  | |||||| |||||||| || || ||| |||||||||||||||||||  |   |    
T  7656404 atccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaa 7656305  T
Q  136 ataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 233  Q
    |  | |||||||  ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  7656304 accattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatcaaactttggagaactgctaatggc 7656207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 7628524 - 7628669
Alignment:
Q  20 attagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 119  Q
    ||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||| |  | |||||| | |||||| || |||||||||||||||||    
T  7628524 attagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctat 7628623  T
Q  120 tccagcaaaaaccgtaataagtccatttcctttatatccactacga 165  Q
    ||||||||| ||  ||| |||||| ||   ||||||||||||||||    
T  7628624 tccagcaaatacattaacaagtcctttcattttatatccactacga 7628669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 7628708 - 7628789
Alignment:
Q  271 aagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttgttcatctcac 352  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7628708 aagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttgttcatctcac 7628789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 39097544 - 39097734
Alignment:
Q  40 atgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataa 139  Q
    ||||||||||||||||||||||| ||||||||||| ||||  ||||| ||||||| || ||| ||||||||||||||||| |||  ||| |  || ||      
T  39097544 atgaattgagggtcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttctatcccactaaacatagttatcg 39097643  T
Q  140 gtccatttcctttatat------ccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 224  Q
     |||||  | ||||| |      ||||| | ||| || |||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  39097644 ttccatcacttttatttgcacccccacttctaacagcaacaggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaact 39097734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 7633487 - 7633556
Alignment:
Q  281 ttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttgttcatctc 350  Q
    |||||||||||||| | |||||||| |||| |||||||| |||||||||| |||||||||||||||||||    
T  7633487 ttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaacttgttcatctc 7633556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 39088005 - 39088057
Alignment:
Q  172 acaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 224  Q
    |||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  39088005 acaggcttcccccaaccaaaatcattatcataaacatcaaaccttggagaact 39088057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 39070932 - 39071002
Alignment:
Q  157 ccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgct 227  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||  |||||||||||    
T  39070932 ccacttcgaaccgccactggctttccccagccaaaatcattgccaaaaacatcaaacctcggagaactgct 39071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 39091394 - 39091448
Alignment:
Q  170 ccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 224  Q
    |||||||||| |||||||||||||||||||| |||||||||||||  ||||||||    
T  39091394 ccacaggcttcccccaaccaaaatcattaccgtaaacatcaaacctcggagaact 39091448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 39091270 - 39091355
Alignment:
Q  52 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaat 137  Q
    ||||||||||  ||||||||||||||||  ||||||||||||| || |||||| ||||||||||| |  |||||||| || |||||    
T  39091270 tcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctaccttcttcaaccccagcaaacacggtaat 39091355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 39082354 - 39082393
Alignment:
Q  175 ggctttccccaaccaaaatcattaccataaacatcaaacc 214  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  39082354 ggcttcccccaaccaaaatcattaccataaacatcaaacc 39082393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 39075095 - 39075160
Alignment:
Q  52 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttct 117  Q
    ||||||||||| ||||||||||| ||||  | |||||||||||||| ||| | |||||||||||||    
T  39075095 tcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttct 39075160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 39070833 - 39070885
Alignment:
Q  64 gcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttc 116  Q
    ||||||||||||||||  |||||||||| || || ||||||||||||||||||    
T  39070833 gcctccaaaatctcataagaaagacaaatttcaacatctatactaccttcttc 39070885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 39087879 - 39087940
Alignment:
Q  52 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttc 113  Q
    ||||||||||  ||||||||||||||||  ||||||||||||| || ||| || ||||||||    
T  39087879 tcatttcccaaagcctccaaaatctcataagaaagacaaacttcaatatcaatgctaccttc 39087940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 8936375 - 8936052
Alignment:
Q  20 attagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 119  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||||||    
T  8936375 attagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctat 8936276  T
Q  120 tccagcaaaaaccgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatgga 219  Q
    ||| ||||| || ||||||||||||||| |||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |||    
T  8936275 tccggcaaatactgtaataagtccatttgctttatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatcaaaccacgga 8936176  T
Q  220 gaactgctaatggctatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcat 319  Q
    ||||||||||||||||||||||| ||||||| |||||||      ||   ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  8936175 gaactgctaatggctatgaaattcttttttggcatgtta------ct---aaagcttggatttcttaaccaagactcatagtgattcttcaacttctcat 8936085  T
Q  320 cagtgtgtgaaacaattaacttgttcatctcac 352  Q
    |||||||| || |||||||||||||||||||||    
T  8936084 cagtgtgtaaagcaattaacttgttcatctcac 8936052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 8913872 - 8913546
Alignment:
Q  20 attagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 119  Q
    ||||||||||  ||||||||||||| |  ||||||||||||||| |||||||||||||| | | ||||||||||||||| |||||| |||||||||||||    
T  8913872 attagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctat 8913773  T
Q  120 tccagcaaaaaccgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatgga 219  Q
    |||  |||| || |||||||||||||||  |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| |||||    
T  8913772 tccgacaaatactgtaataagtccatttattttatatccactacgaactgccacaggctttcccc-------atcattaccataaacatcaaactatgga 8913680  T
Q  220 gaactgctaatggctatgaaattattttttgccatg---ttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttct 316  Q
    ||||| ||||||| |||||||||| ||||| |||||   |||| |  |||| |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  8913679 gaactactaatggatatgaaattagtttttaccatgttcttagcaagcctaacaaagcttggatttcttaaccaagactcgtaatgattcttcaacttct 8913580  T
Q  317 catcagtgtgtgaaacaattaacttgttcatctc 350  Q
    | |||| ||||||| |||||||||||||||||||    
T  8913579 cgtcagcgtgtgaagcaattaacttgttcatctc 8913546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 34 - 294
Target Start/End: Complemental strand, 8942005 - 8941746
Alignment:
Q  34 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 133  Q
    |||||||||||  | |||||| |||||||||||||||||| ||| |  | |||||| |||||||| || |||||||||||||||||||||||||| ||      
T  8942005 acatccatgaaacgtgggtcacttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacat 8941906  T
Q  134 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 233  Q
    | | || |||||||  |||||||||||||||| |||| | ||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||     
T  8941905 ttacaattccatttattttatatccactacga-ctgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatgga 8941807  T
Q  234 tatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagac 294  Q
    || ||||||||| || | |||| ||| |  |||| ||||||||||||||||||||||||||    
T  8941806 taagaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagac 8941746  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 8938887 - 8938828
Alignment:
Q  293 acacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttgttcatctcac 352  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  8938887 acacatagtgattcttcaacttctcatccgtgtgtgaagcaattaacttgttcatctcac 8938828  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 8919140 - 8919071
Alignment:
Q  281 ttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttgttcatctc 350  Q
    |||||||||||||| | |||||||| |||| |||||||| |||||||||| ||||||| |||||||||||    
T  8919140 ttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaatttgttcatctc 8919071  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 40147636 - 40147433
Alignment:
Q  32 caacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaac 131  Q
    ||||||||||||| | | |||||||||||||||||||||||||||  || | |||||| |||||||  || || |||||||||||| |||||||||| ||    
T  40147636 caacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatac 40147537  T
Q  132 cgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatg 231  Q
     ||||| | |||| ||  ||||| |||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||| || ||| ||||| ||    
T  40147536 agtaatcattccacttattttatttccactgcgaactgccacaggttctccccatccaaaatcattaccataaacatcaaaccacggggaattgctactg 40147437  T
Q  232 gcta 235  Q
    ||||    
T  40147436 gcta 40147433  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 8102323 - 8102499
Alignment:
Q  52 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataagtccatttcctt 151  Q
    |||||||||||||||||||||||||  || | |||||| |||||||| || |||||||||||||||||||||||||| || | ||  |||||| ||  ||    
T  8102323 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 8102422  T
Q  152 tatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgcta 228  Q
    ||| |||||| ||||||||||| || |||||||| ||||||| ||| |||||||||||||||||  | |||||||||    
T  8102423 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccactgggaactgcta 8102499  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 6500335 - 6500540
Alignment:
Q  20 attagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 119  Q
    ||||||||||  || |||||||||| | ||||||||  | |||||| |||||| |||  |  | ||||||||||||||| ||||||||||||| |||| |    
T  6500335 attagttggacacagcatccatgaaattagggtcataactcattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttt 6500434  T
Q  120 tccagcaaaaaccgtaataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatgga 219  Q
    ||||||||| ||  |||  |  |||| |  ||||| | |||| |||| |||||| || || ||||| ||||||||||||||||||| ||||||||| ||     
T  6500435 tccagcaaatacactaaccataccatctattttatttacactgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggg 6500534  T
Q  220 gaactg 225  Q
    ||||||    
T  6500535 gaactg 6500540  T

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Target: scaffold0190 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 4435 - 4501
Alignment:
Q  157 ccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaac 223  Q
    ||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  4435 ccacttcgaacccccacaggttttccccaaccaaaatcattaccataaacatcaaaccaaggagaac 4501  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 15745074 - 15745020
Alignment:
Q  170 ccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 224  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| || |||||    
T  15745074 ccacaggttttccccaaccaaaatcattgccataaacatcaaaccagggtgaact 15745020  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 34173991 - 34174053
Alignment:
Q  54 atttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttc 116  Q
    |||||| || ||||||||||| ||||  | |||||||||||||| ||| ||||||||||||||    
T  34173991 atttccaatagcctccaaaatatcataaggaagacaaacttgaatatcaatactaccttcttc 34174053  T

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