View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20672_low_6 (Length: 290)
Name: NF20672_low_6
Description: NF20672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20672_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 26845624 - 26845903
Alignment:
| Q |
11 |
cacagagagtgtgaaagctttcactataaataaacagagcaataaccctcagaaccaacttgctcactccctctttactcatagaaagagaatcacacat |
110 |
Q |
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| T |
26845624 |
cacagagagtgtgaaagctttcactataaataaacagagcaataaccctcagaaccaacttgctcactccctctttactcatagaaagagaatcacacat |
26845723 |
T |
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| Q |
111 |
ggagagagtcagaaaataaataggtcttgtaatggcactcatccaaatttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttag |
210 |
Q |
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| T |
26845724 |
ggagagagtcagaaaataaataggtcttgtaatggcactcatccaaatttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttag |
26845823 |
T |
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| Q |
211 |
ctgttctctctgatccatgatgcaaaatctcacaccaaacgcccataattcatcagatcccaatgtagtagaaatagcac |
290 |
Q |
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| T |
26845824 |
ctgttctctctgatccatgatgcaaaatctcacaccaaacgcccataattcatcagatcccaatgtagtagaaatagcac |
26845903 |
T |
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