View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20672_low_7 (Length: 260)

Name: NF20672_low_7
Description: NF20672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20672_low_7
NF20672_low_7
[»] chr4 (12 HSPs)
chr4 (58-127)||(14459157-14459226)
chr4 (191-243)||(14459226-14459278)
chr4 (1-48)||(1983534-1983581)
chr4 (1-51)||(5112052-5112102)
chr4 (4-53)||(31985871-31985921)
chr4 (1-51)||(34496058-34496108)
chr4 (21-54)||(42599833-42599866)
chr4 (1-51)||(10047190-10047241)
chr4 (1-51)||(25862257-25862308)
chr4 (1-51)||(28468762-28468813)
chr4 (1-52)||(24333620-24333672)
chr4 (1-57)||(39774537-39774593)
[»] chr7 (10 HSPs)
chr7 (1-52)||(2580198-2580249)
chr7 (1-52)||(3047062-3047113)
chr7 (1-52)||(9185398-9185450)
chr7 (1-52)||(18408575-18408627)
chr7 (1-55)||(2647962-2648017)
chr7 (1-51)||(46516546-46516597)
chr7 (1-51)||(28617463-28617512)
chr7 (1-48)||(4796905-4796953)
chr7 (1-52)||(18413452-18413504)
chr7 (1-52)||(20283899-20283951)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-51)||(133516-133566)
[»] chr1 (2 HSPs)
chr1 (1-51)||(13604859-13604909)
chr1 (1-51)||(775483-775534)
[»] chr5 (9 HSPs)
chr5 (1-51)||(36932585-36932635)
chr5 (1-54)||(42127644-42127698)
chr5 (1-52)||(15464342-15464394)
chr5 (1-51)||(19588557-19588608)
chr5 (21-54)||(24555847-24555880)
chr5 (21-54)||(24596878-24596911)
chr5 (1-52)||(10281672-10281724)
chr5 (1-56)||(28832066-28832122)
chr5 (1-52)||(42126642-42126694)
[»] chr2 (6 HSPs)
chr2 (1-51)||(21629762-21629812)
chr2 (1-52)||(10445681-10445733)
chr2 (1-51)||(3491563-3491614)
chr2 (2-51)||(17865014-17865064)
chr2 (2-51)||(20522031-20522081)
chr2 (1-52)||(39482745-39482797)
[»] chr8 (7 HSPs)
chr8 (1-52)||(6813488-6813539)
chr8 (1-52)||(23799813-23799864)
chr8 (1-51)||(28307368-28307418)
chr8 (1-53)||(26287711-26287764)
chr8 (1-53)||(26312962-26313015)
chr8 (1-52)||(31071464-31071517)
chr8 (1-52)||(26300957-26301009)
[»] chr3 (9 HSPs)
chr3 (1-51)||(27986670-27986720)
chr3 (2-52)||(33386893-33386943)
chr3 (1-51)||(1305761-1305812)
chr3 (1-51)||(18554512-18554563)
chr3 (1-52)||(27452769-27452820)
chr3 (1-51)||(32143133-32143184)
chr3 (1-49)||(1309668-1309717)
chr3 (1-52)||(3323788-3323840)
chr3 (1-52)||(6794937-6794989)
[»] chr6 (2 HSPs)
chr6 (1-56)||(5572831-5572887)
chr6 (21-51)||(10077421-10077451)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-52)||(17076-17128)


Alignment Details
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 14459157 - 14459226
Alignment:
Q  58 aaatgctgatgggaataagattccaatcagcttctactatacagacattatctcctccgttagtgacttc 127  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||| | ||||||||||||||||||||||    
T  14459157 aaatggtgatgggaataagatccctatcagcttctactataaagatagtatctcctccgttagtgacttc 14459226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 14459226 - 14459278
Alignment:
Q  191 caactctttactttacagctttcttgagtaaagaataatgaaacactggaggt 243  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||||    
T  14459226 caactctttactttacagctttcttaagtaaataacaatgaaacactgaaggt 14459278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1983534 - 1983581
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcaca 48  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  1983534 gctccacacatctttgttttcatttgtgtgattttgtccgaattcaca 1983581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5112102 - 5112052
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||    
T  5112102 gctccacacatttttgttttcattggtgtgattttatccgaattcacaaca 5112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 31985871 - 31985921
Alignment:
Q  4 ccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaaa 53  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  31985871 ccacacatctttgtttacattggtgtgagttttgtccgaattcacaacaaa 31985921  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34496058 - 34496108
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| ||||||||||| ||||||||||||||    
T  34496058 gctccacacatctttgttttcattggtgtgattttgaccgaattcacaaca 34496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 42599833 - 42599866
Alignment:
Q  21 cattagtgtgattttgtccgaattcacaacaaaa 54  Q
    ||||||||||||||||||||||||||||||||||    
T  42599833 cattagtgtgattttgtccgaattcacaacaaaa 42599866  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10047241 - 10047190
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  10047241 gctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 10047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25862257 - 25862308
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  25862257 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 25862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28468762 - 28468813
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  28468762 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 28468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24333672 - 24333620
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| |||||||||||| ||||||||||||||    
T  24333672 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacaa 24333620  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39774537 - 39774593
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaaaaagc 57  Q
    |||||| |||||||| ||| |||| |||||||||| |||||||||||| ||| ||||    
T  39774537 gctccagacatatttattttcattggtgtgattttatccgaattcacaccaagaagc 39774593  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2580249 - 2580198
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  2580249 gctccacacatctttgtttacattggtgtgattttgtccgaattcacaacaa 2580198  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3047113 - 3047062
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||||||||    
T  3047113 gctccacacatctttgttttcattggtgtgattttgtccgaattcacaacaa 3047062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9185398 - 9185450
Alignment:
Q  1 gctccacacatatttgttta-cattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||  |||||||||||||||| |||||||||||||||    
T  9185398 gctccacacatctttgtttttcattagtgtgattttgaccgaattcacaacaa 9185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18408627 - 18408575
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||    
T  18408627 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 18408575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2647962 - 2648017
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaaaaa 55  Q
    ||||||||||| |||||| | |||| ||||||||||||| ||||||||||||||||    
T  2647962 gctccacacatctttgttattcattggtgtgattttgtctgaattcacaacaaaaa 2648017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46516546 - 46516597
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  46516546 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 46516597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28617463 - 28617512
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||  |||| |||||||||||||||||||||||||    
T  28617463 gctccacacatctttgtttg-attaatgtgattttgtccgaattcacaaca 28617512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4796905 - 4796953
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcaca 48  Q
    ||||||||||| |||||| | |||| |||||||||||||||||||||||    
T  4796905 gctccacacatctttgttattcattggtgtgattttgtccgaattcaca 4796953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18413504 - 18413452
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    ||||| ||||| |||||||||||| |||||| |||| ||||||||||||||||    
T  18413504 gctcctcacatctttgtttacattggtgtgagttttatccgaattcacaacaa 18413452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20283951 - 20283899
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||  |||||||||||||||||||||||||||    
T  20283951 gctccacacatctttgttattcataggtgtgattttgtccgaattcacaacaa 20283899  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 133516 - 133566
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  133516 gctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 133566  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13604859 - 13604909
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13604859 gctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 13604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 775534 - 775483
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  775534 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 775483  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36932585 - 36932635
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  36932585 gctccacacatctttgtttacattggtgtgagtttgtccgaattcacaaca 36932635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42127644 - 42127698
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaaaa 54  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  42127644 gctccacacatctttgttattcattagtgtgattttgtccgaattcacaacaaaa 42127698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15464394 - 15464342
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||    
T  15464394 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 15464342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19588608 - 19588557
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  19588608 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 19588557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 24555847 - 24555880
Alignment:
Q  21 cattagtgtgattttgtccgaattcacaacaaaa 54  Q
    |||| |||||||||||||||||||||||||||||    
T  24555847 cattggtgtgattttgtccgaattcacaacaaaa 24555880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 24596878 - 24596911
Alignment:
Q  21 cattagtgtgattttgtccgaattcacaacaaaa 54  Q
    |||| |||||||||||||||||||||||||||||    
T  24596878 cattggtgtgattttgtccgaattcacaacaaaa 24596911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10281724 - 10281672
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| |||||||||||||| ||||||||||||    
T  10281724 gctccacacatctttgttattcattggtgtgattttgtccaaattcacaacaa 10281672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28832122 - 28832066
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaaaaag 56  Q
    ||||||||||| |||||| | |||| || ||||||||||||| ||||||||||||||    
T  28832122 gctccacacatctttgttattcattggtatgattttgtccgatttcacaacaaaaag 28832066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42126642 - 42126694
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| |||||||||| ||||||||||||||||    
T  42126642 gctccacacatctttgttattcattggtgtgattttatccgaattcacaacaa 42126694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21629812 - 21629762
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  21629812 gctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 21629762  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10445681 - 10445733
Alignment:
Q  1 gctccacacatatttgttta-cattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||  |||| |||||||||||||||||||||||||||    
T  10445681 gctccacacatctttgtttttcattggtgtgattttgtccgaattcacaacaa 10445733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3491614 - 3491563
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  3491614 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 3491563  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 17865064 - 17865014
Alignment:
Q  2 ctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  17865064 ctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 17865014  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 20522081 - 20522031
Alignment:
Q  2 ctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  20522081 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 20522031  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39482797 - 39482745
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| ||||||||||||| |||||||||||||    
T  39482797 gctccacacatctttgttattcatttgtgtgattttgtctgaattcacaacaa 39482745  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6813539 - 6813488
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    |||| |||||| ||||||| |||| |||||||||||||||||||||||||||    
T  6813539 gctcaacacatctttgttttcattggtgtgattttgtccgaattcacaacaa 6813488  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23799813 - 23799864
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||||||| ||| |||| |||||||||||| ||||||||||||||    
T  23799813 gctccacacatattttttttcattggtgtgattttgtacgaattcacaacaa 23799864  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28307418 - 28307368
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||    
T  28307418 gctccacacatctttgttttcattggtgtgattttatccgaattcacaaca 28307368  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26287764 - 26287711
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaaa 53  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||    
T  26287764 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaa 26287711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26313015 - 26312962
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaaa 53  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||    
T  26313015 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaa 26312962  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31071464 - 31071517
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga--ttttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| ||||||  |||| ||||||||||||||||    
T  31071464 gctccacacatctttgtttacattggtgtgagtttttatccgaattcacaacaa 31071517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26301009 - 26300957
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    ||||||| ||| |||||||||||| |||||| |||| ||||||||||||||||    
T  26301009 gctccacgcatctttgtttacattggtgtgagttttatccgaattcacaacaa 26300957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27986670 - 27986720
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    |||||| |||| |||||||||||| |||||| |||||||||||||||||||    
T  27986670 gctccatacatctttgtttacattggtgtgagtttgtccgaattcacaaca 27986720  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 33386893 - 33386943
Alignment:
Q  2 ctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    |||||||||| |||||||||||| |||||| |||||||| |||||||||||    
T  33386893 ctccacacatctttgtttacattggtgtgagtttgtccggattcacaacaa 33386943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1305812 - 1305761
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  1305812 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 1305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18554512 - 18554563
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  18554512 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 18554563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27452820 - 27452769
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||| | ||||||||||||| ||||||    
T  27452820 gctccacacatctttgtttacattggtgttagtttgtccgaattctcaacaa 27452769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32143184 - 32143133
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  32143184 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 32143133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1309717 - 1309668
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaa 49  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||    
T  1309717 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaa 1309668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3323788 - 3323840
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| |||||||||||| ||||||||||||||    
T  3323788 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacaa 3323840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6794937 - 6794989
Alignment:
Q  1 gctccacacatatttgttta-cattagtgtgattttgtccgaattcacaacaa 52  Q
    |||||||||||  ||||||  |||| |||||||||||||||||||||||||||    
T  6794937 gctccacacatcgttgtttttcattggtgtgattttgtccgaattcacaacaa 6794989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5572831 - 5572887
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaaaaag 56  Q
    ||||||||||| |||||| | |||| |||||||||||||||||||||||||| ||||    
T  5572831 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaacacaaag 5572887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 10077421 - 10077451
Alignment:
Q  21 cattagtgtgattttgtccgaattcacaaca 51  Q
    |||||||||||||||||||||||||||||||    
T  10077421 cattagtgtgattttgtccgaattcacaaca 10077451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17128 - 17076
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | ||||  ||||||||||||||||||||||||||    
T  17128 gctccacacatctttgttattcattcatgtgattttgtccgaattcacaacaa 17076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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