View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20672_low_8 (Length: 248)
Name: NF20672_low_8
Description: NF20672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20672_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 4562581 - 4562819
Alignment:
| Q |
8 |
aaaaatattaaaagaaaaattactgctttatattctactattattaacaagaattacttgttaaaaagtttcatattctacaaaaattgataaaacatta |
107 |
Q |
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| T |
4562581 |
aaaaatattaaaagaaaaattactgctttatattctactattattaacaagaattacttgttaaaaagtttcatattctactaaaattgataaaacatta |
4562680 |
T |
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| Q |
108 |
tataaaattaatattttctcagcaaaaagattgaattggttgattctgttatgaaaatcattagcttaattattttggtgtaaattggatattctctgtg |
207 |
Q |
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| T |
4562681 |
tataaaattaatattttctcagc-aaaatattgaattggttgattctcttatgaaaatcattagcttaattatttt-gtgtaaatcggatattctctatg |
4562778 |
T |
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| Q |
208 |
cgcaactgaagacactaatctctcgaacattgtgagactta |
248 |
Q |
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| T |
4562779 |
cgcaactgcagacactaatctctcaaacattgtgagactta |
4562819 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 13948567 - 13948629
Alignment:
| Q |
180 |
ttttggtgtaaattggatattctctgtgcgcaactgaagacactaatctctcgaacattgtgaga |
244 |
Q |
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| T |
13948567 |
ttttggtgtaaattggatat--tccgcgcgcaactgcagagactaatccctcgagcattgtgaga |
13948629 |
T |
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