View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20673_high_11 (Length: 250)
Name: NF20673_high_11
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20673_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 24197897 - 24198109
Alignment:
| Q |
24 |
tgtcatccttccccttttaatttcaattaatcatcattgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcagtttttgtaatt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24197897 |
tgtcatccttccccttttaatttcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcaatttttgtaatt |
24197996 |
T |
|
| Q |
124 |
ggtgatgaatattcccttaaacacatcaaaacattgtta-tttcatcatcacagtcaaaatcaattgttacggttgagaagacatcaaacagtagtcgcg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24197997 |
ggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcactgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcg |
24198096 |
T |
|
| Q |
223 |
gttgagaagaaga |
235 |
Q |
| |
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||||||||||||| |
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| T |
24198097 |
gttgagaagaaga |
24198109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 43449681 - 43449891
Alignment:
| Q |
24 |
tgtcatccttccccttttaatttcaattaatcatcattgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcagtttttgtaatt |
123 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43449681 |
tgtcatccttccccttttaatatcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcaatttttgtaatt |
43449780 |
T |
|
| Q |
124 |
ggtgatgaatattcccttaaacacatcaaaacattgtta-tttcatcatcacagtcaaaatcaattgttacggttgagaagacatcaaacagtagtcgcg |
222 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43449781 |
ggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcattgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcg |
43449880 |
T |
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| Q |
223 |
gttgagaagaa |
233 |
Q |
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||||||||||| |
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| T |
43449881 |
gttgagaagaa |
43449891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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