View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20673_high_12 (Length: 250)
Name: NF20673_high_12
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20673_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 53898922 - 53899163
Alignment:
| Q |
8 |
aagcaaaggtaaacatggaacattacataattgagagacattgtcataatttcggctacattactagcttttaacatttgagttaaagatgtagttcaat |
107 |
Q |
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| T |
53898922 |
aagcaaaggtaaacatggaacattacataattgagagacattgtcataatttcggctacattactagcttttaacatttgagt-aaagatgtagttcaat |
53899020 |
T |
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| Q |
108 |
tgtgcagaaccataaatctcacctcatgacccaatgcctttttaaagcctgtattgtattcattctcctttctaacaaagaaatgcacaacttctttaat |
207 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53899021 |
tgtgaagaaccatcaatctcacctcatgacccaatgcctttttaaagcctgtattgtattcattctcctttctaacaaagaaatgcacaacttctttaat |
53899120 |
T |
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| Q |
208 |
aggagatacatgttttacagatttatgagaagaatctgtccct |
250 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53899121 |
aggagatacatgttttacagattgatgagaagaatctgtccct |
53899163 |
T |
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