View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20673_low_13 (Length: 250)
Name: NF20673_low_13
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20673_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3663418 - 3663191
Alignment:
| Q |
1 |
tattattgttctcataaatgacacagttacatgatcaataatgtcactttgacagaaacaaataaaaaa--tgagtgagtagagtttggacttttgagat |
98 |
Q |
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| T |
3663418 |
tattattgttctcataaatgacacagttacatgatcaat---gtcacttggacagaaacaaataaaaaaaatgagtgagtagagttt-------tgagat |
3663329 |
T |
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| Q |
99 |
aacatattacatttannnnnnnn-acaaatggtcaccaaccatgtcaccatctcactcgtttagaatgagatgtactacaagtttctacttctacaacaa |
197 |
Q |
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| T |
3663328 |
a-catattacatttatttttttttacaaatggtcaccaaccatgtcactatctcactcgtttagaatgagatgtactgcaagtttctacttctacaacaa |
3663230 |
T |
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| Q |
198 |
gtacttaagagttgtgttggtgttctatgcaatgttattc |
237 |
Q |
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|||||| |||| |||||||||||||||||||||||||||| |
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| T |
3663229 |
gtactt-agagctgtgttggtgttctatgcaatgttattc |
3663191 |
T |
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