View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20673_low_2 (Length: 623)

Name: NF20673_low_2
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20673_low_2
NF20673_low_2
[»] scaffold0449 (1 HSPs)
scaffold0449 (70-147)||(4922-4999)
[»] chr3 (2 HSPs)
chr3 (70-144)||(48905295-48905369)
chr3 (110-142)||(32014693-32014725)
[»] chr4 (4 HSPs)
chr4 (529-589)||(20502917-20502977)
chr4 (292-362)||(50086448-50086518)
chr4 (291-362)||(39274956-39275027)
chr4 (287-365)||(10575980-10576057)
[»] chr8 (3 HSPs)
chr8 (288-365)||(43631506-43631582)
chr8 (296-365)||(32646819-32646888)
chr8 (290-362)||(37167015-37167086)
[»] chr1 (1 HSPs)
chr1 (291-367)||(17554853-17554929)
[»] chr7 (1 HSPs)
chr7 (289-365)||(33887889-33887965)


Alignment Details
Target: scaffold0449 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 4999 - 4922
Alignment:
Q  70 tacaacgatccaaattacaacaatatgtattactatttacacaaagtagtatgaagcaacatgtcataagcatgctcc 147  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4999 tacaacgatccaatttacaacaataagtattactatttacacaaagtagtatgaagcaacatgccataagcattctcc 4922  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 48905295 - 48905369
Alignment:
Q  70 tacaacgatccaaattacaacaatatgtattactatttacacaaagtagtatgaagcaacatgtcataagcatgc 144  Q
    |||||||||||||   ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  48905295 tacaacgatccaataaacaacaataagtattactacttacacaaagtagtatgaagcaacatgtcataagtatgc 48905369  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 32014693 - 32014725
Alignment:
Q  110 acaaagtagtatgaagcaacatgtcataagcat 142  Q
    |||||||||||||||||||||||||||||||||    
T  32014693 acaaagtagtatgaagcaacatgtcataagcat 32014725  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 529 - 589
Target Start/End: Original strand, 20502917 - 20502977
Alignment:
Q  529 agaataacagaggtcgcgagacggggaccgttagatggaaagagtgtcagaatttgaaaca 589  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||  ||| |||| ||||||    
T  20502917 agaataacaaaggtcgcgagacgtggaccgttagatggaaagagcatcataattagaaaca 20502977  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 50086518 - 50086448
Alignment:
Q  292 actctttaaacattacaaaataaacaatcatttctttgaaaaatcaagtattttaatttccaatgcattga 362  Q
    |||||||||||||| ||||||||||||| |||  ||  ||||||||| |||||| |||| |||||||||||    
T  50086518 actctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattga 50086448  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 39274956 - 39275027
Alignment:
Q  291 cactctttaaacattacaaaataaacaatcatttctttgaaaaatcaagtattttaatttccaatgcattga 362  Q
    |||| ||||| ||||  ||| |||||||| |||| ||| ||||||||| ||||| |||||||||||||||||    
T  39274956 cactatttaagcattcaaaagtaaacaattatttttttaaaaaatcaaatatttcaatttccaatgcattga 39275027  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 10575980 - 10576057
Alignment:
Q  287 aggacactctttaaacattacaaaataaacaatcatttctttgaaaaatcaagtattttaatttccaatgcattgatta 365  Q
    |||||||||||||| ||||  |||||||  ||| |||| ||  ||||||||| |||||| |||||||||||||||||||    
T  10575980 aggacactctttaagcattttaaaataagtaattattt-ttcaaaaaatcaaatattttgatttccaatgcattgatta 10576057  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 43631582 - 43631506
Alignment:
Q  288 ggacactctttaaacattacaaaataaacaatcatttctttgaaaaatcaagtattttaatttccaatgcattgatta 365  Q
    ||||||||||||||||||  ||||||| |||| |||| |   ||||||||| |||||||||||| |||||||||||||    
T  43631582 ggacactctttaaacattctaaaataa-caattatttataaaaaaaatcaaatattttaatttctaatgcattgatta 43631506  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 32646819 - 32646888
Alignment:
Q  296 tttaaacattacaaaataaacaatcatttctttgaaaaatcaagtattttaatttccaatgcattgatta 365  Q
    ||||||||||  |||||||||||| |||  ||| |||| |||| |||||||||||  |||||||||||||    
T  32646819 tttaaacattttaaaataaacaattattcttttaaaaagtcaaatattttaatttttaatgcattgatta 32646888  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 37167015 - 37167086
Alignment:
Q  290 acactctttaaacattacaaaataaacaatcatttctttgaaaaatcaagtattttaatttccaatgcattga 362  Q
    |||||||||||||||| ||||||||||||| | |||||  |||||| || || ||  ||||||||||||||||    
T  37167015 acactctttaaacatttcaaaataaacaatta-ttcttcaaaaaattaaatagttcgatttccaatgcattga 37167086  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 367
Target Start/End: Original strand, 17554853 - 17554929
Alignment:
Q  291 cactctttaaacattacaaaataaacaatcatttctttgaaaaatcaagtattttaatttccaatgcattgattata 367  Q
    ||||||||||||||| ||||||||||||| |||| ||  |||| | || | ||| ||||| ||||||||||||||||    
T  17554853 cactctttaaacatttcaaaataaacaattattttttaaaaaagttaaatgtttcaatttacaatgcattgattata 17554929  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 33887965 - 33887889
Alignment:
Q  289 gacactctttaaacattacaaaataaacaatcatttctttgaaaaa-tcaagtattttaatttccaatgcattgatta 365  Q
    |||||||||||| |||| ||||||||| ||| ||| |||| ||||| |||| ||||| ||||| ||||||||||||||    
T  33887965 gacactctttaagcattccaaaataaataattatt-ctttaaaaaagtcaaatatttcaattttcaatgcattgatta 33887889  T

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