View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20673_low_3 (Length: 538)

Name: NF20673_low_3
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20673_low_3
NF20673_low_3
[»] chr7 (6 HSPs)
chr7 (142-526)||(42029828-42030212)
chr7 (42-112)||(42030237-42030307)
chr7 (411-484)||(10325121-10325194)
chr7 (307-380)||(712131-712204)
chr7 (437-477)||(717501-717541)
chr7 (439-491)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (389-491)||(51080720-51080822)
chr1 (439-491)||(2536530-2536582)
chr1 (439-491)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (389-491)||(40287065-40287167)
chr2 (439-491)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (428-484)||(38998907-38998963)
chr3 (437-484)||(27265807-27265854)
chr3 (439-491)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (437-484)||(13757556-13757603)
chr6 (437-484)||(19047096-19047143)
chr6 (439-491)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (437-491)||(14856970-14857024)
chr5 (389-473)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (436-481)||(14541224-14541269)
chr8 (388-480)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (437-480)||(2087389-2087432)
chr4 (439-491)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (439-491)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 142 - 526
Target Start/End: Complemental strand, 42030212 - 42029828
Alignment:
Q  142 ttgcattctggtggacaataggtatgtatgcattgtttgtcatgagaaaagccagcaatcggacgttataagtcattttctttttcacttaacatagtag 241  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42030212 ttgcattctggtggacaataggtatgtatgcattggttgtcatgagaaaagccagcaatcggacgttataagtcattttctttttcacttaacatagtag 42030113  T
Q  242 gaattgagatacttggttttctcctctgtgtatgtgatgatgaaataacggaagcatttggtttgcatacgactttgaaatgaacattagaccttcaact 341  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42030112 gaattgagatacttggttttctcctctatgtatgtgatgatgaaataacggaagcatttggtttgcatacgactttgaaatgaacattagaccttcaact 42030013  T
Q  342 ttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaac 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42030012 ttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacagatgttccataatagtttcaaaaac 42029913  T
Q  442 tctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaattgatacagctagtcccatataattttttatgatgat 526  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||||    
T  42029912 tctcatgttgaatttaatatgaggcaaattaatggggtcgctcgtgaattgatacggttagtcctatataatgtttgatgatgat 42029828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 42030307 - 42030237
Alignment:
Q  42 gacaacaagggggttggtttaagtggcgtgagatcaatttttatgtactgtgtaatttattttagaaccta 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42030307 gacaacaagggggttgggttaagtggcgtgagatcaatttttatgtactgtgtaatttattttagacccta 42030237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 10325194 - 10325121
Alignment:
Q  411 tagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 484  Q
    ||||||| |||| |||||| |||| || ||||||||||| |||||||||| ||||||||| |||| ||||||||    
T  10325194 tagacaattgttacttaattgtttaaacaactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctc 10325121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 712131 - 712204
Alignment:
Q  307 catacgactttgaaatgaacattagaccttcaactttataatttggattttgctctcgactttaagaatgttgt 380  Q
    |||||||||||| |||| |||| | |||||||| || ||||| | ||||||||||| |||| |||||| |||||    
T  712131 catacgactttggaatggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgt 712204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 717501 - 717541
Alignment:
Q  437 aaaactctcatgttgagtttaatatgaggcaaactaatggg 477  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  717501 aaaactctcatgttgagtttaataggagacaagctaatggg 717541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 40901905 - 40901853
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  40901905 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 40901853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 491
Target Start/End: Complemental strand, 51080822 - 51080720
Alignment:
Q  389 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 488  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  ||||||||||||| |||||||||| ||||||| ||||||||||||||| |||    
T  51080822 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatga 51080723  T
Q  489 att 491  Q
    |||    
T  51080722 att 51080720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 2536582 - 2536530
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  2536582 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 2536530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 11351697 - 11351645
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  11351697 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 11351645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 491
Target Start/End: Complemental strand, 40287167 - 40287065
Alignment:
Q  389 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 488  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  |||||||||||||  ||||||||||||||||| ||||||||||| ||| |||    
T  40287167 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactcatga 40287068  T
Q  489 att 491  Q
    |||    
T  40287067 att 40287065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 29894421 - 29894369
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  29894421 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 29894369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 38998907 - 38998963
Alignment:
Q  428 atagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 484  Q
    |||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  38998907 atagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctc 38998963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 27265807 - 27265854
Alignment:
Q  437 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 484  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  27265807 aaaactctcatgttgagtttaataagagacaaactaatgaggtcgctc 27265854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 36684916 - 36684968
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||| ||||| |||| ||||||| ||||||||||||||| ||||||    
T  36684916 aactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaatt 36684968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 484
Target Start/End: Complemental strand, 13757603 - 13757556
Alignment:
Q  437 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 484  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  13757603 aaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctc 13757556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 19047096 - 19047143
Alignment:
Q  437 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 484  Q
    ||||||||||||| |||||||||| ||||||| |||||| ||||||||    
T  19047096 aaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctc 19047143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 942704 - 942756
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    |||||| |||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  942704 aactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaatt 942756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 14857024 - 14856970
Alignment:
Q  437 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||||| |||||||||||||||||||| |||| | |||||| ||||||    
T  14857024 aaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaatt 14856970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 473
Target Start/End: Original strand, 32163040 - 32163124
Alignment:
Q  389 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaa 473  Q
    |||||||||||||| |||| | ||||||  |||| |   |||||||  ||||||||||| | |||||||||| ||||||||||||    
T  32163040 ttggttgtattattactgcctgtagacagttgtttcaggatagttttcaaaactctcatatcgagtttaataggaggcaaactaa 32163124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 14541224 - 14541269
Alignment:
Q  436 aaaaactctcatgttgagtttaatatgaggcaaactaatggggtcg 481  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||    
T  14541224 aaaaactctcgtattgagtttaatatgaggcaaactaatgtggtcg 14541269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 11911515 - 11911423
Alignment:
Q  388 tttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtc 480  Q
    ||||||||||| || | || || |||||||  |||  ||||||||||  ||||||||||||| ||||| |||| |||| |||| |||||||||    
T  11911515 tttggttgtatcatatttgtatgtagacaatagttaattaatagttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtc 11911423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 2087432 - 2087389
Alignment:
Q  437 aaaactctcatgttgagtttaatatgaggcaaactaatggggtc 480  Q
    |||||||||||||| | ||||||| |||||||||||||||||||    
T  2087432 aaaactctcatgttaaatttaatacgaggcaaactaatggggtc 2087389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 1394136 - 1394188
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||| || ||||||    
T  1394136 aactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaatt 1394188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 48113 - 48165
Alignment:
Q  439 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 491  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  48113 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 48165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University