View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20673_low_4 (Length: 486)

Name: NF20673_low_4
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20673_low_4
NF20673_low_4
[»] chr7 (2 HSPs)
chr7 (20-337)||(37469648-37469964)
chr7 (332-474)||(37472040-37472182)
[»] chr3 (2 HSPs)
chr3 (151-305)||(40735877-40736034)
chr3 (36-79)||(40736068-40736111)
[»] chr6 (4 HSPs)
chr6 (20-96)||(33004035-33004111)
chr6 (389-474)||(33003834-33003919)
chr6 (161-214)||(33003979-33004032)
chr6 (34-70)||(33004103-33004139)
[»] chr1 (1 HSPs)
chr1 (19-96)||(17594930-17595007)
[»] chr4 (2 HSPs)
chr4 (113-200)||(52084258-52084341)
chr4 (113-200)||(52093621-52093704)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 37469648 - 37469964
Alignment:
Q  20 tgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcatcatctcatccctgcaaatccgtatgatctatctctctcatcca 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37469648 tgaggcttccttcatcctccagaatgaatctctccaatggcgcgaggcttcgctcatcatctcatccctgcaaatccgtatgatctatctctctcatcca 37469747  T
Q  120 ttttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggacattggattatggattttccagagttattgatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      
T  37469748 ttttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggacattggattatggattttccagagttatcgaca 37469847  T
Q  220 gaggaggtatattcaccctttttcattttcattttctaaaacaaaatcatattaagatttatcttggtaatcttttctcaccttttacaattgcagttgg 319  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37469848 gaggaggtatattcaccctttttcattttcattttct-aaacaaaatcatattaagatttatcttggtaatcttttctcaccttttacaattgcagttgg 37469946  T
Q  320 acacggtgttaaactgaa 337  Q
    |||| |||||||||||||    
T  37469947 acacagtgttaaactgaa 37469964  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 332 - 474
Target Start/End: Original strand, 37472040 - 37472182
Alignment:
Q  332 actgaaacacgtcattcatttttgtgttccgtttctgcacttatttcaaggtttcttatgcggacttttatgaacacttcgaagcttggtgcaagaaata 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  37472040 actgaaacacgtcattcatttttgtgttccgtttctgcacttatttcaaggtttctgatgcggacttttatgaacactttgaagcttggtgcaagaaata 37472139  T
Q  432 tggcaaaacatactcctcagaggaacataaacgccacaggttc 474  Q
    || |||||||||||||| |||||||||||||||| ||||||||    
T  37472140 tgtcaaaacatactcctaagaggaacataaacgctacaggttc 37472182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 151 - 305
Target Start/End: Complemental strand, 40736034 - 40735877
Alignment:
Q  151 aatttcagatacatgatgtaggagttttccacaggacattggattatggattttccagagttattgatggaggaggt-atat---tcaccctttttcatt 246  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||| ||| ||||||||| || ||||||||| ||||   |    | | ||||||    
T  40736034 aatttcagatacttgatgtaggagtgttccacaggacattggattacggagttttcagagttatcgaaggaggaggttatatgactatgacatattcatt 40735935  T
Q  247 ttcattttctaaaacaaaatcatattaagatttatcttggtaatcttttctcacctttt 305  Q
    ||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  40735934 ttcattttctaaa-caaaatcatattaagatttatcgtgctaatcttttctcacctttt 40735877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 40736111 - 40736068
Alignment:
Q  36 ctccagaatgaatctctccaatggcgtgaggcttcgctcatcat 79  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  40736111 ctccagaatgaatctctccaatggcgtgaggcttccttcatcat 40736068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 33004111 - 33004035
Alignment:
Q  20 tgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcatcatctcatccctgcaaatcc 96  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  33004111 tgaggcttccttcatcttccagaatgaatttctccaacggcgtgaggcttcgctcatcatctcatccctgcaaatcc 33004035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 33003919 - 33003834
Alignment:
Q  389 atgcggacttttatgaacacttcgaagcttggtgcaagaaatatggcaaaacatactcctcagaggaacataaacgccacaggttc 474  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||    
T  33003919 atgccgacttttatgaacacttcgaaacttggtgcaagaaatatggaaaaacatactcttcagaggaacataaacgctataggttc 33003834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 33004032 - 33003979
Alignment:
Q  161 acatgatgtaggagttttccacaggacattggattatggattttccagagttat 214  Q
    ||||||||||||||| ||| | ||| |||||||||||||| |||||||||||||    
T  33004032 acatgatgtaggagtattctataggtcattggattatggactttccagagttat 33003979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 33004139 - 33004103
Alignment:
Q  34 tcctccagaatgaatctctccaatggcgtgaggcttc 70  Q
    ||||||||||||||||||||||||||| |||||||||    
T  33004139 tcctccagaatgaatctctccaatggcttgaggcttc 33004103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 17595007 - 17594930
Alignment:
Q  19 gtgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcatcatctcatccctgcaaatcc 96  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17595007 gtgacgcttccttcatcctccagtatgagtctctccaatggcgtgaggcttcgctcatcatctcatctctgcaaatcc 17594930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 52084341 - 52084258
Alignment:
Q  113 tcatccattttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggacattggattatgga 200  Q
    ||||||||||||||||| | ||| ||||| || |||||||||||||||  ||||   |||||| ||||| ||||||||||||| ||||    
T  52084341 tcatccattttattttctgcttatctttt-cgttggtgaatttcagatctatga---aggagtgttccataggacattggattctgga 52084258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 52093704 - 52093621
Alignment:
Q  113 tcatccattttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggacattggattatgga 200  Q
    ||||||||||||||||| | ||| ||||| || |||||||||||||||  ||||   |||||| ||||| ||||||||||||| ||||    
T  52093704 tcatccattttattttctgcttatctttt-cgttggtgaatttcagatctatga---aggagtgttccataggacattggattctgga 52093621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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