View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20673_low_5 (Length: 413)
Name: NF20673_low_5
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20673_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 45641574 - 45641185
Alignment:
| Q |
20 |
aaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaagaaacaccccacaatacagacaaattccatctg |
119 |
Q |
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| T |
45641574 |
aaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaacaaacacccaacaatacagacaaattccatctg |
45641475 |
T |
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| Q |
120 |
aacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaatatgtggattgcattctttggaacaaaaatc |
219 |
Q |
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| T |
45641474 |
aacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaatatgtggattgcattctttggaacaaaaatc |
45641375 |
T |
|
| Q |
220 |
attcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactaccagttgacccattagggttttccaatacatttggacgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45641374 |
attcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactactagttgacccattagggttttccaatacatttggacgc |
45641275 |
T |
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| Q |
320 |
gaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatcaccaccttacctatgctactc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45641274 |
gaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatcaccaccttacctctgctactc |
45641185 |
T |
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